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feat: add software deployment cache as item for shared fs usage #99

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Merged
johanneskoester merged 3 commits into from
Mar 8, 2026
Merged

feat: add software deployment cache as item for shared fs usage #99

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ec963f0
feat: add software deployment cache as item for shared fs usage
johanneskoester Mar 8, 2026
669c70f
unify to pypi dependencies
johanneskoester Mar 8, 2026
8ca9559
fix
johanneskoester Mar 8, 2026
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15 changes: 6 additions & 9 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,10 @@ publish = { features = ["publish"] }
snakemake-interface-executor-plugins = { path = ".", editable = true }
snakemake = { git = "https://github.com/snakemake/snakemake.git" }
snakemake-executor-plugin-cluster-generic = { git = "https://github.com/snakemake/snakemake-executor-plugin-cluster-generic.git" }
pytest = ">=8.3.5,<9"
ruff = ">=0.10.0,<0.11"
mypy = ">=1.15.0,<2"
pytest-cov = ">=6.0.0,<7"

[tool.pixi.feature.dev.tasks.test]
cmd = [
Expand All @@ -49,13 +53,6 @@ cmd = [
]
description = "Run tests and generate coverage report"


[tool.pixi.feature.dev.dependencies]
pytest = ">=8.3.5,<9"
ruff = ">=0.10.0,<0.11"
mypy = ">=1.15.0,<2"
pytest-cov = ">=6.0.0,<7"

[tool.pixi.feature.dev.tasks]
format = "ruff format snakemake_interface_executor_plugins"
lint = "ruff check"
Expand All @@ -66,9 +63,9 @@ qc = { depends-on = ["format", "lint", "type-check"] }
ignore_missing_imports = true

# Publish
[tool.pixi.feature.publish.dependencies]
[tool.pixi.feature.publish.pypi-dependencies]
twine = ">=6.1.0,<7"
python-build = ">=1.2.2,<2"
build = ">=1.2.2,<2"

[tool.pixi.feature.publish.tasks]
build = { cmd = "python -m build", description = "Build the package into the dist/ directory" }
Expand Down
2 changes: 2 additions & 0 deletions snakemake_interface_executor_plugins/settings.py
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Expand Up @@ -142,6 +142,7 @@ class SharedFSUsage(SettingsEnumBase):
SOURCES = 3
STORAGE_LOCAL_COPIES = 4
SOURCE_CACHE = 5
SOFTWARE_DEPLOYMENT_CACHE = 6

@classmethod
def choices(cls) -> List[str]:
Expand Down Expand Up @@ -172,6 +173,7 @@ def assume_common_workdir(self) -> bool:
SharedFSUsage.PERSISTENCE,
SharedFSUsage.INPUT_OUTPUT,
SharedFSUsage.SOFTWARE_DEPLOYMENT,
SharedFSUsage.SOFTWARE_DEPLOYMENT_CACHE,
)
)

Expand Down