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@yigbt Computational Biology and Chemistry - UFZ, Leipzig, Germany

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    13 repositories

    • EcoToxFred

      Public
      EcoToxFred, a Neo4j-backed Chatbot with whom you can discuss environmental monitoring data collected in a large knowledge graph and stored in a Neo4j Graph Data…
      Python
      •1•2•5•0•Updated Apr 20, 2026Apr 20, 2026

    • multiGSEA

      Public
      The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
      R
      •
      Other
      •6•21•1•0•Updated Oct 30, 2025Oct 30, 2025

    • deepFPlearn

      Public
      Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets
      Python
      •
      Other
      •8•11•10•11•Updated Dec 19, 2024Dec 19, 2024

    • ChemSimTorch

      Public
      ChemSimTorch is a Python package for efficient computation of chemical similarity using PyTorch tensors, enabling fast and scalable matrix calculations. It curr…
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • uap

      Public
      Universal Analysis Pipeline - A python tool for controlled and coordinated data analysis
      Python
      •12•3•3•2•Updated Nov 3, 2022Nov 3, 2022

    • MIRfix

      Public
      The MIRfix pipeline
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Jun 22, 2021Jun 22, 2021

    • metaboliteIDmapping

      Public
      R
      •
      Other
      •2•4•0•1•Updated May 10, 2021May 10, 2021

    • scImpNetworks

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2021Mar 19, 2021

    • MOD-Finder

      Public
      MOD-Finder (Multi-Omics Data set Finder) is an easy-to-use tool to efficiently search for compound-related omics data sets.
      R
      •0•0•1•0•Updated Jun 25, 2019Jun 25, 2019

    • archive

      Public
      create an archive and verify its contents
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Apr 25, 2019Apr 25, 2019

    • conda_envs

      Public
      Conda environments used in our group
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 19, 2018Dec 19, 2018

    • uap-docker

      Public
      Files required to build a uap Docker container for testing purposes.
      Makefile
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 7, 2018Dec 7, 2018

    • ePoPE

      Public
      Efficient Prediction of Paralog Evolution
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 29, 2018Oct 29, 2018
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