Skip to content

@plantinformatics Plant Informatics (Agriculture Victoria)

Change the repository type filter

All

    Repositories list

    28 repositories

    • fairybread

      Public
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated May 1, 2026May 1, 2026

    • genolink

      Public
      Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genom…
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated May 1, 2026May 1, 2026

    • pretzel

      Public
      Javascript full-stack framework for Big Data visualisation and analysis
      javascriptemberopen-source
      javascriptemberopen-sourcedata-scienceemberjsexpressbioinformaticsbig-dataexpressjsdata-visualization
      JavaScript
      •
      GNU General Public License v3.0
      •13•46•159•9•Updated Apr 29, 2026Apr 29, 2026

    • brioche

      Public
      Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workf…
      bioinformaticsgenomicsnextflow
      bioinformaticsgenomicsnextflowmarkersaggmapping-toolsgenebankbrioche
      R
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • vcf-genotype-brapi

      Public
      Client and server functions to access genotype data from VCF via a custom web API and BrAPI
      JavaScript
      •0•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • pretzel-documentation-website

      Public
      Shell
      •2•0•3•2•Updated Jan 19, 2026Jan 19, 2026

    • pretzel-static-pages

      Public
      Static HTML Content for the landing page of the Pretzel project instance
      HTML
      •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • strategic-partnership-website

      Public
      0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • shortbread2

      Public
      Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Gene…
      bioinformaticsgatkwgs
      bioinformaticsgatkwgsngs-pipelinenextflow-pipeline
      Perl
      •1•1•0•0•Updated Nov 18, 2025Nov 18, 2025

    • lamington

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Jun 23, 2025Jun 23, 2025

    • pretzel-generated-doc-tutorial

      Public
      Basic introductory documentation, generated from pretzel source using The-Pocket/Tutorial-Codebase-Knowledge
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 21, 2025Apr 21, 2025

    • pretzel-data

      Public
      Data structure for https://github.com/plantinformatics/pretzel
      GNU General Public License v3.0
      •2•0•2•0•Updated Mar 16, 2025Mar 16, 2025

    • child-process-progressive

      Public
      Wrap node child_process, implementing a progressive option for multiple data chunks sent via SSE.
      JavaScript
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • germinate-brapi

      Public
      BrAPI implementation for Germinate
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • pretzel-input-generator

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•9•0•Updated Oct 4, 2024Oct 4, 2024

    • interval-bins

      Public
      binEvenLengthRound() : Calculate the bin size for even-sized bins to span the given interval. binBoundaries() : Generate an array of even-sized bins to span the…
      JavaScript
      •0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • ember-cli-multi-store-service

      Public
      JavaScript
      •
      MIT License
      •3•0•0•0•Updated May 29, 2024May 29, 2024

    • ember-split-view-modifier

      Public
      ember {{split-view}} element modifier
      JavaScript
      •
      MIT License
      •3•0•0•0•Updated Feb 18, 2024Feb 18, 2024

    • AGG-priority-traits

      Public
      Data from the AGG's November 2023 Community of Practice meeting
      R
      •0•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • pretzel-user-guide

      Public
      User guide for Pretzel
      Python
      •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • ember-raf-scheduler

      Public
      Simple generic scheduler that wraps the Ember runloop and requestAnimationFrame
      JavaScript
      •
      MIT License
      •10•0•0•0•Updated Sep 9, 2023Sep 9, 2023

    • germinate-server

      Public
      The generic plant genetic resources database
      Java
      •
      Apache License 2.0
      •3•0•0•0•Updated Apr 13, 2023Apr 13, 2023

    • AVRIG-wheatbarley-40k

      Public
      Datasets related to the Infinium Wheat Barley 40K SNP chip co-developed by Agriculture Victoria and InterGrain
      0•0•0•0•Updated May 13, 2022May 13, 2022

    • ember-jsoneditor

      Public
      Ember component to view, edit and format JSON.
      JavaScript
      •
      MIT License
      •18•0•0•0•Updated Feb 2, 2021Feb 2, 2021

    • pretzel-wheat-agronomic-genes

      Public
      Curated list of agronomic genes of interest in wheat
      0•0•1•0•Updated Mar 23, 2020Mar 23, 2020

    • pretzel-application-note

      Public
      A repository for an application note about pretzel
      TeX
      •0•0•0•0•Updated Jan 11, 2019Jan 11, 2019

    • pretzel-user-guide-old

      Public
      Pretzel User Guide
      0•0•2•0•Updated Nov 20, 2018Nov 20, 2018

    • Durum_iSelect_90kSNP_GenotypeCalling

      Public
      Perl script for generating genotype calls for unrelated durum wheat samples assayed using the Illumina iSelect 90K SNP bead chip array
      Perl
      •0•0•0•0•Updated Aug 27, 2018Aug 27, 2018
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.