pretzel-application-note

A repository for an application note about pretzel.

Source

Application note is drafted in RMarkdown in pretzel.Rmd file. RMarkdown is well intergrated in RStudio, but if you'd rather write/edit in a text editor of your choice, you can render it as per instructions below.

Bibliography

Among the alternatives available we opted for BibTeX, see references.bib.

Rendering

Using docker

docker run --rm --user $(id -u):$(id -g) \
  --volume $(pwd):/writing \
  --workdir /writing rsuchecki/renderer:0.1 ./render.R

Using singularity

Note that this is rather slow, possibly due to container conversion from docker to singularity format.

singularity exec docker://rsuchecki/renderer:0.1 ./render.R

Natively

If you'd like to render the manuscript without docker/singularity, you will need the following:

• R e.g. on ubuntu sudo apt apt install r-base-core
• pandoc e.g. on ubuntu sudo apt install pandoc pandoc-citeproc
• LaTeX e.g. on ubuntu sudo apt install texlive texlive-latex-extra
• R packages:
  • rmarkdown
  • rticles
  • bookdown

Then:

./render.R