GitHub - mycobactopia-org/clockwork-nf: DSL2 Nextflow port of the Clockwork DB-free variant_call path (CRyPTIC/WHO); pinned to clockwork:v0.12.5 for parity. Embeds into nf-core/tbanalyzer as --mode clockwork.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
assets		assets
conf		conf
data/clockwork-references/H37Rv		data/clockwork-references/H37Rv
docs		docs
modules/local		modules/local
workflows		workflows
IMPLEMENTATION_PLAN.md		IMPLEMENTATION_PLAN.md
main.nf		main.nf
nextflow.config		nextflow.config

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DSL2 Nextflow port of the Clockwork DB-free variant_call path (CRyPTIC/WHO); pinned to clockwork:v0.12.5 for parity. Embeds into nf-core/tbanalyzer as --mode clockwork.