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- xbs-variant-calling Public
compleX Bacterial Sample variant caller — Nextflow port of the XBS pipeline (Heupink 2021) as a generic-bacterial reusable variant-calling subworkflow
mycobactopia-org/xbs-variant-calling’s past year of commit activity - ONT-TB-NF Public Forked from HKU-BAL/ONT-TB-NF
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
mycobactopia-org/ONT-TB-NF’s past year of commit activity - mtbc-resistotyper-nf Public
MTBC resistance-prediction building block — runs published predictors (TB-Profiler, Mykrobe, …) over variant calls. First upstream integration: XBS.
mycobactopia-org/mtbc-resistotyper-nf’s past year of commit activity - clockwork-nf Public
DSL2 Nextflow port of the Clockwork DB-free variant_call path (CRyPTIC/WHO); pinned to clockwork:v0.12.5 for parity. Embeds into nf-core/tbanalyzer as --mode clockwork.
mycobactopia-org/clockwork-nf’s past year of commit activity - mtbc-varcaller-nf Public
Multi-backend, consensus-normalised MTBC variant-calling substrate. Phase 1: gatk_vqsr (via XBS) + Clair3.
mycobactopia-org/mtbc-varcaller-nf’s past year of commit activity - TB-DROP Public Forked from nottwy/TB-DROP
Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations
mycobactopia-org/TB-DROP’s past year of commit activity - MycoVarP-nf Public
mycobactopia-org/MycoVarP-nf’s past year of commit activity
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