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Continuous variable integration into SO and loupe file.

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In mdibl/scscape;

· Riley-Grindle opened on Mar 14, 2025

Feature Naming Module to combine gene_id and gene_name for SO features

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In mdibl/scscape;

· Riley-Grindle opened on Mar 14, 2025

Integrate meta data into make seurat, find NN Clusters, and Integration

enhancementNew feature or requestNew feature or request

Status: Open.

#27 In mdibl/scscape;

· Riley-Grindle opened on Mar 7, 2025

Add test-data checkpoints to assets folder in pipeline. Each .rds needs to be stored.

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In mdibl/scscape;

· Riley-Grindle opened on Dec 4, 2024

Categorical naming adoption in segmentation.csv - Sample sheet parsing and cross-check with external sample meta information table.

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In mdibl/scscape;

· Riley-Grindle opened on Nov 21, 2024

Restructure module components

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In mdibl/scscape;

· Riley-Grindle opened on Sep 27, 2024

Remove group variables being passed into MakeSeurat to allow for segmentation changes to resume up until merge

enhancementNew feature or requestNew feature or request

Status: Open.

#20 In mdibl/scscape;

· Riley-Grindle opened on Sep 26, 2024

Add K parameter

enhancementNew feature or requestNew feature or request

Status: Open.

#19 In mdibl/scscape;

· RPSeaman opened on Sep 24, 2024

Ability to Run Subset Pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#16 In mdibl/scscape;

· RPSeaman opened on Sep 23, 2024

NF-tests for deterministic metrics of pipeline (validation log, execution log, cells removed)

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In mdibl/scscape;

· Riley-Grindle opened on Sep 13, 2024

Auxillary gene list - TESTING - no mt, no s, no g2m, no g2rm

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In mdibl/scscape;

· Riley-Grindle opened on Aug 8, 2024