quality: adopt canonical check:all standard (pl-a59c)

.github/workflows/ci.yml

@@ -16,24 +16,12 @@ jobs:
       - name: Install dependencies
         run: bun install
 
-      - name: Lint
-        run: bun run lint
-
-      - name: Typecheck
-        run: bun run typecheck
-
-      - name: Aggregate quality checks
+      - name: Quality gates (check:all)
         run: bun run check:all
 
-      - name: Generated CLI docs are up to date
-        run: bun run gen:docs:check
-
       - name: Run tests (CI reporter)
         run: bun run test:ci
 
-      - name: Coverage ratchet
-        run: bun run check:coverage
-
       - name: Test timing summary
         if: always()
         run: bun run report:test-timing

.mulch/expertise/quality.jsonl

@@ -0,0 +1,2 @@
+{"type":"decision","classification":"tactical","recorded_at":"2026-06-12T05:48:44.323Z","evidence":{"seeds":"pl-a59c","commit":"a2443728bb772cf13238f6666e1321995de8999b"},"title":"Byte-identical check:all runner with biome formatter override","rationale":"The fleet standard freezes scripts/check-all.ts and scripts/check-ci-parity.ts byte-identical; canopy's biome formatter would reformat them, so the sanctioned fix (matching plot/seeds) is a biome.json override disabling the formatter for exactly those two files rather than editing the scripts.","id":"mx-2e4545"}
+{"type":"failure","classification":"tactical","recorded_at":"2026-06-12T05:48:44.523Z","evidence":{"commit":"a2443728bb772cf13238f6666e1321995de8999b"},"description":"Template l5-toolkit scripts fail canopy lint as copied: check-all.ts/check-ci-parity.ts violate the biome formatter at lineWidth 100, and the ratchet test files have unsorted imports under organizeImports.","resolution":"Added a biome.json override disabling the formatter for the two byte-identical scripts (fleet pattern from plot/seeds), ran biome check --write on the non-frozen ratchet test files, and upgraded @biomejs/biome 2.4.6 -> ^2.4.14 (resolved 2.4.16) with a matching $schema bump.","id":"mx-42bf1f"}

.mulch/mulch.config.yaml

@@ -1,8 +1,9 @@
 version: '1'
 domains:
-  - cicd
-  - canopy
-  - architecture
+  cicd: {}
+  canopy: {}
+  architecture: {}
+  quality: {}
 governance:
   max_entries: 100
   warn_entries: 150

.seeds/issues.jsonl

@@ -95,3 +95,7 @@
 {"id":"canopy-912f","title":"cn setup pi recipe + pi-aware onboarding marker variant (ONBOARD_VERSION 2→3, :pi suffix)","status":"open","type":"task","priority":2,"plan_step_index":4,"description":"<!-- seeds:plan-backref:start -->\nStep 5 of plan pl-c2a8.\n\nParent seed: canopy-a29b — Build pi-canopy extension — prompts as pi slash commands\nPlan template: feature\nPlan approach: Ship inside `@os-eco/canopy-cli` (Option A from the investigation doc) — adds `extensions/pi/{index.ts, lib/*.ts, README.md}`, plus a `pi` manifest, the `pi-package` keyword, and `peerDependencies` + `peerDependenciesMeta.optional: true`…\n\nRun `sd plan show pl-c2a8` for the full plan (context, alternatives, sibling steps, acceptance criteria).\n<!-- seeds:plan-backref:end -->","createdAt":"2026-05-15T22:04:29.570Z","updatedAt":"2026-05-15T22:04:29.570Z","plan_id":"pl-c2a8","blockedBy":["canopy-94fc"],"blocks":["canopy-4e3d","canopy-a29b"]}
 {"id":"canopy-4e3d","title":"Tests + README","status":"open","type":"task","priority":2,"plan_step_index":5,"description":"<!-- seeds:plan-backref:start -->\nStep 6 of plan pl-c2a8.\n\nParent seed: canopy-a29b — Build pi-canopy extension — prompts as pi slash commands\nPlan template: feature\nPlan approach: Ship inside `@os-eco/canopy-cli` (Option A from the investigation doc) — adds `extensions/pi/{index.ts, lib/*.ts, README.md}`, plus a `pi` manifest, the `pi-package` keyword, and `peerDependencies` + `peerDependenciesMeta.optional: true`…\n\nRun `sd plan show pl-c2a8` for the full plan (context, alternatives, sibling steps, acceptance criteria).\n<!-- seeds:plan-backref:end -->","createdAt":"2026-05-15T22:04:29.570Z","updatedAt":"2026-05-15T22:04:29.570Z","plan_id":"pl-c2a8","blockedBy":["canopy-714e","canopy-f6b9","canopy-bb56","canopy-912f"],"blocks":["canopy-a29b"]}
 {"id":"canopy-da2c","title":"Cancel pi-canopy extension build before any code lands","status":"open","type":"task","priority":2,"createdAt":"2026-05-17T18:51:12.189Z","updatedAt":"2026-05-17T18:51:12.189Z","description":"Sibling decision to mulch-18e4 (mulch repo, revert) and seeds-2f21 (seeds repo, revert). Canopy is the easy case: no extension code has been written yet — the plan pl-c2a8 is approved with 6 open child seeds (canopy-94fc, canopy-714e, canopy-f6b9, canopy-bb56, canopy-912f, canopy-4e3d) but step 1 (foundation) has not started. Closing them out before any code lands is a clean prevention rather than a rollback.\n\n## Why (decision rationale)\n\nAudit of the mulch pi extension (this session, 2026-05-15) plus a philosophy discussion with the owner concluded that pi extensions are not the right integration surface for any of the three os-eco primitives (mulch / seeds / canopy):\n\n1. **The mulch audit found the install recipe was silently broken** — `ml setup pi` wrote bare `@os-eco/mulch-cli` to .pi/settings.json, but pi's resolver only auto-installs entries with the `npm:` prefix. Verified empirically. The seeds recipe uses the same pattern. The canopy recipe (planned as step 5 of pl-c2a8) would have inherited the same bug. Distribution complexity for pi packages is a real cost we keep paying.\n\n2. **Extensions aren't needed.** CLAUDE.md is the universal substrate — auto-discovered by pi, Claude Code, Cursor, Codex, every coding agent. The canopy CLI is clean (`cn list`, `cn render --json`, `cn emit`); agents are very good at calling CLIs via bash. The qualitative differentiator pi-canopy would have added — `resources_discover` rendering every prompt as a native slash command — is cosmetic; the agent can already run `cn render <name>` itself.\n\n3. **For canopy specifically, the marginal value is lowest of the three.** Mulch had a (weak) case for systemPrompt-cached prime via `before_agent_start`. Seeds had a case for the status widget showing ready/in-progress/blocked counts (human UX). Canopy is a passive prompt library — there is no comparable surface. The plan even acknowledges this: `canopy-a29b` explicitly excludes auto-prime (Appendix A of the investigation doc rejected `cn prime --json`) and explicitly excludes a status widget (alternative #9 in pl-c2a8: 'canopy is a passive library — no work-queue state worth surfacing'). What remains is `resources_discover` + 14 cn_* tool wrappers + 9 slash commands — all of which are reachable via bash + the existing CLI.\n\nThe plan's own framing ('the LLM rarely emits, rarely updates') is a symptom of agents needing better CLAUDE.md prose, not a pi-specific code path. Fix the prose, ship the value uniformly across all runtimes.\n\n## What to do\n\nNo code rollback (no code has landed). Close out the plan and its children with cross-references.\n\n```bash\n# 1. close the 6 child seeds\nsd close canopy-94fc canopy-714e canopy-f6b9 canopy-bb56 canopy-912f canopy-4e3d \\\n  --reason 'pi-canopy extension build cancelled; see <this-seed-id>. CLI + CLAUDE.md remain the integration surface for all agent runtimes.'\n\n# 2. close the parent feature seed\nsd close canopy-a29b --reason 'pi-canopy extension build cancelled; see <this-seed-id>'\n\n# 3. handle the plan record\n# sd plan does not currently support a 'cancelled' status — options:\n#   (a) sd plan outcome pl-c2a8 --outcome cancelled (if supported)\n#   (b) leave pl-c2a8 with status 'approved' and a comment, since all children are closed\n#   (c) hand-edit .seeds/plans.jsonl to add an outcome row\n# Verify what's available with: sd plan --help\n```\n\n## What stays in canopy (no work needed)\n\n- `cn prime` continues to work as a tool call agents can invoke from bash.\n- `cn list` / `cn render` / `cn emit` / `cn update` continue to work via bash.\n- The `<!-- canopy:start -->` onboarding snippet in CLAUDE.md remains as-is (non-pi variant).\n- The `cn config` work that landed in pl-f13b (canopy-9e5b) stays — that was useful CLI infrastructure regardless of pi.\n\n## Out of scope (file separately if any of this is wanted)\n\n- **Document the CLAUDE.md-only integration pattern** — same docs work as the sibling rollbacks. Worth doing once across all three primitives in os-eco/docs/ rather than three times.\n- **Improve `cn prime` output** so it carries enough context to nudge agents toward `cn list` / `cn render` workflows. The current prime is terse; making it richer is a higher-leverage move than building an extension.\n- **Drop the `pi-extensions-investigation.md` doc** (in os-eco root) or annotate it with a 'superseded — see <this-seed-id> + mulch-18e4 + seeds-2f21' header.\n\n## Acceptance\n\n- canopy-a29b closed with cross-reference to this seed.\n- All 6 children of pl-c2a8 closed with cross-reference.\n- pl-c2a8 marked cancelled / not in progress (mechanism TBD per `sd plan --help`).\n- No `extensions/` directory exists in canopy/.\n- No `pi` manifest field or peerDependencies in canopy/package.json.\n- No `cn setup` command added (it was step 5 of the plan — leave as future-if-needed).\n- Existing canopy CLI (`cn prime`, `cn list`, `cn render`, etc.) unchanged.\n\n## Sibling references\n\n- mulch-18e4 — Roll back pi extension (mulch repo, revert)\n- seeds-2f21 — Roll back pi-seeds extension (seeds repo, revert)\n- pl-c2a8, canopy-a29b — superseded by this seed","labels":["pi-extension","rollback","audit-followup"]}
+{"id":"canopy-9e11","title":"Adopt canonical check:all standard","status":"open","type":"feature","priority":2,"createdAt":"2026-06-12T04:51:00.628Z","updatedAt":"2026-06-12T05:48:19.548Z","plan_id":"pl-a59c"}
+{"id":"canopy-3b09","title":"Add the canonical scripts/check-all.ts quiet runner copied byte-identical from templates/l5-toolkit/scripts/check-all.ts, with canopy's exported GATES manifest in the standard's order: lint, typecheck, check:agents, check:dups, check:deps, check:size, check:debt, gen:docs:check, check:coverage, check:ci-parity (last) -- note check:coverage and the conditional gen:docs:check gate must be ADDED to the manifest (they exist as scripts but are absent from the current 5-gate && chain). Replace package.json check:all with `bun scripts/check-all.ts`, add `verify`: `bun run check:all`, and add scripts/check-all.test.ts. If check-debt-markers.ts / check-file-sizes.ts lack co-located tests, add them for parity with the other repos. Confirm the quiet-output contract.","status":"closed","type":"task","priority":2,"plan_step_index":0,"description":"<!-- seeds:plan-backref:start -->\nStep 1 of plan pl-a59c.\n\nParent seed: canopy-9e11 — Adopt canonical check:all standard\nPlan template: feature\nPlan approach: Swap the && chain for the canonical quiet runner with a GATES manifest in the standard's order, adding check:coverage (currently absent from the chain) and the conditional gen:docs:check gate (canopy is a doc generator) slotted before…\n\nRun `sd plan show pl-a59c` for the full plan (context, alternatives, sibling steps, acceptance criteria).\n<!-- seeds:plan-backref:end -->","createdAt":"2026-06-12T04:53:29.073Z","updatedAt":"2026-06-12T05:48:19.434Z","plan_id":"pl-a59c","blocks":["canopy-b9ee","canopy-9e11"],"closedAt":"2026-06-12T05:48:19.434Z"}
+{"id":"canopy-b9ee","title":"Add scripts/check-ci-parity.ts (with test) copied from templates/l5-toolkit/scripts, importing the GATES array from check-all.ts; add the check:ci-parity script as the final gate in the manifest. Reconcile any residual non-canonical gate name. Verify check:ci-parity passes against .github/workflows/ci.yml.","status":"closed","type":"task","priority":2,"plan_step_index":1,"description":"<!-- seeds:plan-backref:start -->\nStep 2 of plan pl-a59c.\n\nParent seed: canopy-9e11 — Adopt canonical check:all standard\nPlan template: feature\nPlan approach: Swap the && chain for the canonical quiet runner with a GATES manifest in the standard's order, adding check:coverage (currently absent from the chain) and the conditional gen:docs:check gate (canopy is a doc generator) slotted before…\n\nRun `sd plan show pl-a59c` for the full plan (context, alternatives, sibling steps, acceptance criteria).\n<!-- seeds:plan-backref:end -->","createdAt":"2026-06-12T04:53:29.073Z","updatedAt":"2026-06-12T05:48:19.491Z","plan_id":"pl-a59c","blocks":["canopy-e548","canopy-9e11"],"closedAt":"2026-06-12T05:48:19.491Z"}
+{"id":"canopy-e548","title":"Wire .github/workflows/ci.yml to invoke the canonical gates (or `bun run check:all`) so the local manifest matches CI. Run `bun run check:all` and `bun run verify` green end-to-end with the quiet-output contract and a passing check:ci-parity.","status":"closed","type":"task","priority":2,"plan_step_index":2,"description":"<!-- seeds:plan-backref:start -->\nStep 3 of plan pl-a59c.\n\nParent seed: canopy-9e11 — Adopt canonical check:all standard\nPlan template: feature\nPlan approach: Swap the && chain for the canonical quiet runner with a GATES manifest in the standard's order, adding check:coverage (currently absent from the chain) and the conditional gen:docs:check gate (canopy is a doc generator) slotted before…\n\nRun `sd plan show pl-a59c` for the full plan (context, alternatives, sibling steps, acceptance criteria).\n<!-- seeds:plan-backref:end -->","createdAt":"2026-06-12T04:53:29.073Z","updatedAt":"2026-06-12T05:48:19.548Z","plan_id":"pl-a59c","blocks":["canopy-9e11"],"closedAt":"2026-06-12T05:48:19.548Z"}