feat(plotting): dense-plot overlap gate + auto_font option + feature_map auto-size (#219)#326

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feat/issue-219-auto-font

Commits on Jul 1, 2026

test(plotting): add dense-plot row-label overlap gate (issue #219, phase 0, red)

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feat(plotting): shrink dense subcat row-label font to clear overlap (issue #219, phase 1)

breimanntools
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claude
committed
feat(config,plotting): global auto_font option + feature_map size auto-derivation (issue #219, phase 2)

breimanntools
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claude
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test(plotting): activate pytest-mpl visual-regression baselines (issue #219, phase 3)

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claude
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fix(plotting): auto_font figsize=None crash + skip redundant render on sparse maps (issue #219, review loop 1)

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claude
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test(plotting): extend row-label overlap gate to heatmap + option-isolation guard (issue #219, review loop 2)

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claude
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docs(plotting): pyright-clean the auto_font wiring + versionchanged note (issue #219, review loop 3)

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claude
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test(plotting): lock in overlap-gate edge cases from adversarial review (issue #219, review loop 4)

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feat(feature_map): opt-in seq_char_fill (edge-to-edge residue characters)
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feat(feature_map): consistent 1:1.15 grid aspect under auto_font
breimanntools
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fix(feature_map): keep position ticks on the bottom under auto_font grid-aspect + default seq_char_fill=True

breimanntools
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claude
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feat(plotting): unconditional top-tick fix + realistic baselines + tiered scale-sweep gallery (issue #219)

breimanntools
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claude
committed
feat(plotting): add sequence-length (5-100 aa) + CPP-SHAP sweep to plot gallery

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claude
committed
feat(feature_map): auto-widen figure for long sequences so residue letters stay legible (issue #219)

breimanntools
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claude
committed
fix(feature_map): position ticks point down (not up) + grid aspect 1.15 -> 1.05

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and
claude
committed
test(plotting): remove misleading pytest-mpl baselines + test_visual_regression

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claude
committed
test(plotting): proper pixel-comparison visual-regression test (clean baselines)

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claude
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ci: add Visual Regression pixel-comparison gate (pytest-mpl, pinned env)

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test(plotting): use CI-runner (Linux) baselines for the visual-regression gate

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feat(plotting): dense-plot overlap gate + auto_font option + feature_map auto-size (#219)#326

feat(plotting): dense-plot overlap gate + auto_font option + feature_map auto-size (#219)#326
breimanntools wants to merge 27 commits into
masterfrom
feat/issue-219-auto-font

Commits on Jul 1, 2026

test(plotting): add dense-plot row-label overlap gate (issue #219, phase 0, red)

feat(plotting): shrink dense subcat row-label font to clear overlap (issue #219, phase 1)

feat(config,plotting): global auto_font option + feature_map size auto-derivation (issue #219, phase 2)

test(plotting): activate pytest-mpl visual-regression baselines (issue #219, phase 3)

fix(plotting): auto_font figsize=None crash + skip redundant render on sparse maps (issue #219, review loop 1)

test(plotting): extend row-label overlap gate to heatmap + option-isolation guard (issue #219, review loop 2)

docs(plotting): pyright-clean the auto_font wiring + versionchanged note (issue #219, review loop 3)

test(plotting): lock in overlap-gate edge cases from adversarial review (issue #219, review loop 4)

feat(feature_map): opt-in seq_char_fill (edge-to-edge residue characters)

feat(feature_map): consistent 1:1.15 grid aspect under auto_font

fix(feature_map): keep position ticks on the bottom under auto_font grid-aspect + default seq_char_fill=True

feat(plotting): unconditional top-tick fix + realistic baselines + tiered scale-sweep gallery (issue #219)

feat(plotting): add sequence-length (5-100 aa) + CPP-SHAP sweep to plot gallery

feat(feature_map): auto-widen figure for long sequences so residue letters stay legible (issue #219)

fix(feature_map): position ticks point down (not up) + grid aspect 1.15 -> 1.05

test(plotting): remove misleading pytest-mpl baselines + test_visual_regression

test(plotting): proper pixel-comparison visual-regression test (clean baselines)

ci: add Visual Regression pixel-comparison gate (pytest-mpl, pinned env)

test(plotting): use CI-runner (Linux) baselines for the visual-regression gate

Commits on Jul 2, 2026

feat(feature_map): auto_font sizes cells to a constant 1 : 1.1 shape

feat(plotting): auto_font holds constant grid cell size (default on)

Merge remote-tracking branch 'origin/master' into feat/issue-219-auto-font

fix(plotting): auto_font only grows the figure; fix figsize=None + seq_char_fill byte-identity

docs(plotting): re-execute CPP plot example notebooks under auto_font default-on

docs(options): add auto_font gallery to the options example notebook

test(config): auto_font default is now True

fix(plotting): explicit figsize wins over auto_font; pin figsize in the structure explorer