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- Status: Open.#345 In breimanntools/aaanalysis;
Resolve three output-changing correctness defects (CPP redundancy filter, TreeModel seeding, BH p-values) under ADR-0032 + regolden
prio:1Very importantVery importanttopic:coreCore featuresCore featurestype:bugSomething isn't workingSomething isn't workingStatus: Open.#343 In breimanntools/aaanalysis;Fix batch of low-risk correctness bugs: defensive DataFrame copies, config/plotting validation gaps, validator messages
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:bugSomething isn't workingSomething isn't workingStatus: Open.#342 In breimanntools/aaanalysis;CPP filter blind to distributed (jointly-strong) signals
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#341 In breimanntools/aaanalysis;StructurePreprocessor: per-feature failure isolation + msms/backend routing
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:bugSomething isn't workingSomething isn't workingStatus: Open.#340 In breimanntools/aaanalysis;CPP.run(n_jobs>1) crashes with multiprocessing.Manager() EOFError outside notebooks
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:bugSomething isn't workingSomething isn't workingStatus: Open.#339 In breimanntools/aaanalysis;find_features / Pattern splits fail on free peptides (no flanks)
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:bugSomething isn't workingSomething isn't workingStatus: Open.#338 In breimanntools/aaanalysis;feat: NumericalFeature.feature_matrix for numeric CPP (run_num) outputs
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#337 In breimanntools/aaanalysis;epic: usability gaps surfaced by a real epitope-prediction project
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#336 In breimanntools/aaanalysis;- Status: Open.#335 In breimanntools/aaanalysis;
feat: dPULearn pos/unlabelled mined-mask convenience + get_labels + named sample colors
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#308 In breimanntools/aaanalysis;feat: SequenceFeature.scale_mean — scale-average baseline featurizer
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#307 In breimanntools/aaanalysis;