feat: Mock observation of brightness temperature

.gitignore

@@ -16,3 +16,6 @@ docs/_build/
 _version.py
 _autosummary/
 coverage.xml
+.ipynb_checkpoints
+.pytest_cache/
+__pycache__/

docs/conf.py

@@ -1,13 +1,10 @@
 """Configuration for docs."""
 
 import os
-from datetime import datetime, timezone
-
-from tuesday import __version__
-
+from datetime import UTC, datetime
 from unittest.mock import MagicMock
 
-sys.path.insert(0, str(Path(__file__).absolute().parent.parent / "src"))
+from tuesday import __version__
 
 
 class Mock(MagicMock):
@@ -27,7 +24,6 @@ def __getattr__(cls, name):
     "h5py",
     "cached_property",
 ]
-sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES)
 
 extensions = [
     "sphinx.ext.autodoc",
@@ -60,7 +56,7 @@ def __getattr__(cls, name):
 source_suffix = ".rst"
 master_doc = "index"
 project = "tuesday"
-year = str(datetime.now(tz=timezone.utc).year)
+year = str(datetime.now(tz=UTC).year)
 author = "21cmFAST Team"
 copyright = f"{year}, {author}"
 version = release = __version__

docs/tutorials/computing_and_plotting_power_spectra.ipynb

@@ -185,14 +185,13 @@
     }
    ],
    "source": [
-    "\n",
     "ax = plot_coeval_slice(\n",
     "    delta_x,\n",
     "    box_len,\n",
     "    transform2slice=coeval2slice_x(idx=15),\n",
     "    title=\"Slice in x-direction\",\n",
-    "    v_x=delta_x[15,...]*un.m / un.s,\n",
-    "    v_y=delta_x[15,...]*un.m / un.s,\n",
+    "    v_x=delta_x[15, ...] * un.m / un.s,\n",
+    "    v_y=delta_x[15, ...] * un.m / un.s,\n",
     "    quiver_decimate_factor=3,\n",
     ")"
    ]
@@ -232,7 +231,10 @@
    ],
    "source": [
     "plot_coeval_slice(\n",
-    "    delta_x.value*un.mK, box_len, transform2slice=coeval2slice_y(), title=\"Slice in y-direction\"\n",
+    "    delta_x.value * un.mK,\n",
+    "    box_len,\n",
+    "    transform2slice=coeval2slice_y(),\n",
+    "    title=\"Slice in y-direction\",\n",
     ")"
    ]
   },
@@ -793,16 +795,16 @@
     "fig, ax = plt.subplots(1, 1, figsize=(18, 7))\n",
     "\n",
     "ax = tuesday.core.plot_power_spectrum(\n",
-    "        ps1d,\n",
-    "        at_k=0.05,\n",
-    "        fontsize=20,\n",
-    "        ax=ax,\n",
-    "        color=f\"r\",\n",
-    "        legend=f\"k ~ 0.05\",\n",
-    "        legend_kwargs={\"frameon\": False},\n",
-    "        logx=False,\n",
-    "        logy=False,\n",
-    "    )\n",
+    "    ps1d,\n",
+    "    at_k=0.05,\n",
+    "    fontsize=20,\n",
+    "    ax=ax,\n",
+    "    color=\"r\",\n",
+    "    legend=\"k ~ 0.05\",\n",
+    "    legend_kwargs={\"frameon\": False},\n",
+    "    logx=False,\n",
+    "    logy=False,\n",
+    ")\n",
     "\n",
     "ax = tuesday.core.plot_power_spectrum(\n",
     "    all_analytic,\n",
@@ -840,16 +842,16 @@
     "fig, ax = plt.subplots(1, 1, figsize=(18, 7))\n",
     "\n",
     "ax = tuesday.core.plot_power_spectrum(\n",
-    "        ps1d,\n",
-    "        fontsize=20,\n",
-    "        ax=ax,\n",
-    "        color=f\"r\",\n",
-    "        at_k=at_k,\n",
-    "        legend=f\"k ~ \"+str(at_k),\n",
-    "        legend_kwargs={\"frameon\": False},\n",
-    "        logx=False,\n",
-    "        logy=False,\n",
-    "    )\n",
+    "    ps1d,\n",
+    "    fontsize=20,\n",
+    "    ax=ax,\n",
+    "    color=\"r\",\n",
+    "    at_k=at_k,\n",
+    "    legend=\"k ~ \" + str(at_k),\n",
+    "    legend_kwargs={\"frameon\": False},\n",
+    "    logx=False,\n",
+    "    logy=False,\n",
+    ")\n",
     "\n",
     "ax = tuesday.core.plot_power_spectrum(\n",
     "    all_analytic,\n",

pyproject.toml

@@ -16,7 +16,7 @@ authors = [
     { name = "James Davies", email = "james.davies@sns.it" },
     { name = "Steven Murray", email = "murray.steveng@gmail.com" },
 ]
-requires-python = ">=3.10"
+requires-python = ">=3.11"
 license = {text="MIT"}
 classifiers = [
     "Development Status :: 4 - Beta",
@@ -31,7 +31,7 @@ classifiers = [
 ]
 
 dependencies = [
-    "21cmfast",
+    "21cmfast>=4.1.0",
     "21cmsense>=2.0.0",
     "astropy>=7.0.1",
     "attrs>=25.3.0",
@@ -41,19 +41,25 @@ dependencies = [
 ]
 dynamic = ['version']
 
-[project.optional-dependencies]
-21cmfast = ['21cmFAST>=4.0.0b']
+[dependency-groups]
 tests = [
-    "coverage",
-    "pytest-cov",
-    "pre-commit",
-    "pytest",
-    "sphinx",
+    "coverage>=7.8.2",
+    "pytest>=8.3.5",
+    "pytest-cov>=6.1.1",
 ]
-dev = [
-    "tuesday-eor[tests,21cmfast]"
+
+docs = [
+    "sphinx>=8.2.3",
+    "tools21cm>=2.3.10",
 ]
 
+dev = [
+    "ipykernel>=7.2.0",
+    "pip>=26.0.1",
+    "pre-commit>=4.2.0",
+    {include-group = "tests"},
+    {include-group = "docs"},
+]
 
 [project.urls]
 Repository = "https://github.com/21cmfast/tuesday"
@@ -111,19 +117,24 @@ ignore = [
 ]
 
 [tool.ruff.lint.per-file-ignores]
+"docs/tutorials/lc_noise_compare_tools21cm.ipynb" = [
+    "T201", # print statements
+    "N",
+    "F",  # TODO: remove all these once this notebook is fixed.
+]
 "tests/*.py" = [
     "D",  # ignore missing docstring in tests
     "DTZ",   # ignore datetime in tests
     "T",     # print statements
 ]
+"*.ipynb" = [
+    "T201", # print statements
+]
 "docs/conf.py" = [
     "A",  # conf.py can shadow builtins
     "ERA",
     "DTZ",
 ]
-"docs/tutorials/*.ipynb" = [
-    "T201", # print statements
-]
 
 [tool.ruff.lint.pydocstyle]
 convention = 'numpy'
@@ -136,16 +147,5 @@ property-decorators = [
 max-complexity = 21
 
 [tool.uv.sources]
-21cmfast = { git = "https://github.com/21cmFAST/21cmFAST" }
-
-[dependency-groups]
-21cmfast = [
-    "21cmfast",
-]
-dev = [
-    "coverage>=7.8.2",
-    "pre-commit>=4.2.0",
-    "pytest>=8.3.5",
-    "pytest-cov>=6.1.1",
-    "sphinx>=8.2.3",
-]
+powerbox = { git = "https://github.com/steven-murray/powerbox", rev = "better-interp" }
+21cmsense = { git = "https://github.com/rasg-affiliates/21cmSense", rev = "fast-hist" }

src/tuesday/core/__init__.py

@@ -3,37 +3,49 @@
 __all__ = [
     "CylindricalPS",
     "SphericalPS",
+    "apply_beam",
     "bin_kpar",
-    "blackmanharris",
     "calculate_ps",
     "calculate_ps_coeval",
     "calculate_ps_lc",
     "coeval2slice_x",
     "coeval2slice_y",
     "coeval2slice_z",
+    "compute_beam",
+    "compute_thermal_rms_per_snapshot_vis",
+    "compute_thermal_rms_uvgrid",
+    "compute_uv_sampling",
+    "convert_half_to_full_uv_plane",
     "cylindrical_to_spherical",
-    "grid_baselines_uv",
+    "horizon_limit",
+    "instrument_models",
     "lc2slice_x",
     "lc2slice_y",
+    "observe_lightcone",
     "plot_1d_power_spectrum_k",
     "plot_1d_power_spectrum_z",
     "plot_2d_power_spectrum",
     "plot_coeval_slice",
     "plot_pdf",
     "plot_power_spectrum",
     "plot_redshift_slice",
-    "sample_from_rms_noise",
-    "sample_lc_noise",
+    "plotting",
+    "sample_from_rms_uvgrid",
+    "summaries",
     "taper2d",
-    "thermal_noise_per_voxel",
     "validate",
 ]
+from . import instrument_models, plotting, summaries
 from .instrument_models.noise import (
-    grid_baselines_uv,
-    sample_from_rms_noise,
-    sample_lc_noise,
+    apply_beam,
+    compute_beam,
+    compute_thermal_rms_per_snapshot_vis,
+    compute_thermal_rms_uvgrid,
+    compute_uv_sampling,
+    convert_half_to_full_uv_plane,
+    observe_lightcone,
+    sample_from_rms_uvgrid,
     taper2d,
-    thermal_noise_per_voxel,
 )
 from .plotting.powerspectra import (
     plot_1d_power_spectrum_k,