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vgl-hub / rdeval Public

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Optimization of memory management#23

Merged

gf777 merged 15 commits into

mainvgl-hub/rdeval:mainfrom

optimizationvgl-hub/rdeval:optimizationCopy head branch name to clipboard

Mar 17, 2026

Conversation Commits15 (15)Checks Files changed

Merged

Optimization of memory management#23
gf777 merged 15 commits into
mainfrom
optimization

Commits

Commits on Feb 24, 2026

avoid memory reallocations for new reads
gf777
committed
remove additional memory allocations
gf777
committed

Commits on Feb 25, 2026

reuse bam records in output as well
gf777
committed
removed zlib dep, fasta/fastq input also handled by htslib
gf777
committed
precompute powers
gf777
committed
free up memory from batches at the end
gf777
committed
faster sampling input loop
gf777
committed
added elasticblockingqueue to reduce memory overhead
gf777
committed
Update reads.cpp
gf777
committed
added bgzip support
gf777
committed
Update reads.cpp
gf777
committed
Update reads.cpp
gf777
committed
fixed bug with bgzip output
gf777
committed
Update main.cpp
gf777
committed
avoid automatically writing bgzip
gf777
committed

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