Skip to content

Pytest dry-run support and test raw_data#59

Open
dfbautista wants to merge 24 commits into
masterfrom
pytest
Open

Pytest dry-run support and test raw_data#59
dfbautista wants to merge 24 commits into
masterfrom
pytest

Conversation

@dfbautista
Copy link
Copy Markdown
Contributor

With any push or PR, GitHub actions will dry-run the snakemake workflow to check all rules and any errors using pytest workflow. It also provides fastqs to test the whole pipeline (it takes 10 min aprox to finish). Finally, it changes how the raw data location is stated, so that it can look at other paths.

dfbautista added 24 commits May 15, 2025 16:54
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant