Bioinformatics Tutorials

These assignments are mainly based on the practical sessions at the Eastern Africa Network for Bioinformatics Training (EANBiT) from 11th June to 13th July, 2018.

Assignment 1: Linux Fundamentals

Using nrf1_seq.fa, answer the following questions:

1. How many organisms are represented in the sequence file provided? Which command did you use?

2. How many of these sequences are mRNA?

3. How many nucleotides are in the 18th sequence? Which commands did you use.

4. Create a file (seq_ids.txt) containing all the sequence IDs, are there duplicates?

The indicative solutions are indicated on Assignment1.pdf file in this repo. The bash script assign1 is a solution for question 1.

Acknowledgment

1. Dr. Caleb Kibet

How to Contribute

To contribute, fork the repository, make some updates and send me a pull request.

License

This work is licensed under the Creative Commons Attribution 3.0 Unported License.