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Releases: treangenlab/Seqwin

v0.3.2

25 Apr 02:48
df32378

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  • Added support for loading FASTA files from directories (#10).
  • Bug fixes and code cleanup (#9).

v0.3.1

06 Apr 06:08
0ead8ec

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  • Add Windows compatibility (#6).
  • Seqwin is now available on PyPI and can be installed with pip install seqwin (#7, #8).

v0.3.0

01 Apr 22:56
569d284

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  • Use a custom C++ extension for faster generation of minimizer sketches, using code adopted from btllib (#5).
  • Python dependencies can now be installed with pip (31439bb).
  • Non-Python dependencies are now optional during runtime (4b03a08).

v0.2.3

16 Mar 20:27
f927965

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  • Include more signature metrics in signatures.csv (4fe7821). Check out Seqwin Wiki for more details.
  • Improve help message and error handling (f702737, fc19b8b)

v0.2.2

16 Feb 08:47
c0777e8

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Performace improvements.

v0.2.1

31 Jan 04:34
91920a0

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Performace improvements.

  • Sort k-mers in parallel (9198c10).
  • Optimize edge generation (55e86aa).

v0.2.0

27 Oct 20:58
4f200a9

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  • Update divergence calculation (54b0f8a).
  • Change "marker" to "signature" (b7d7517).
  • In signatures.csv, show the fraction of non-target genomes with at least one BLAST hit (54b0f8a).

v0.1.0

08 Oct 20:51
d17a0f4

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Initial release.