Optimized pipelines for Spatial Transcriptomics (ST) data analysis using Seurat & Giotto, designed for reproducible benchmarking and biological insight.

Decoding the Archetypes and Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy

Identifying cell-type-specific spatially variable genes

Spatial-sequencing: The final frontier. These are the voyages of the 10x Visium pipeline, space-seek.

Spatial Transcriptome

A R package for deconvolving low‐resolution Visium HD spatial data back to high‐resolution spots via barcode‐ and coordinate‐based methods, with built‐in visualization.

🔬 Benchmark Spatial Transcriptomics data analysis with optimized pipelines using Seurat and Giotto for reproducible results and biological insights.