strain-level

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pandafengye / MIST

MIST: a metagenomic intra-species typing tool.

hierarchical-clustering maximum-likelihood-estimation metagenomic-sequencing pathogen-identification decontamination strain-level

Updated Jul 26, 2024
Python

Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to cover most described bacteria. Protal is further able to disentangle intraspecific variation across samples.

metagenomics alignment bacteria taxonomic-classification ultra-fast short-reads reference-based taxonomic-profiling gtdb strain-level strain-level-profiling intraspecific-variation

Updated Feb 20, 2026
C

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strain-level

Here are 2 public repositories matching this topic...

pandafengye / MIST

4less / protal

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