Kieran et al. 2024 - npj Viruses - influenza A transmission thersholds
Codes for the final project of the subject Computational Biophysics of the degree Engineering Physics (UPC). By Marta Alcalde i Núria Mercadé.
Kieran et al. 2025 - Scientific Reports. R code for lethality/morbidity machine learning with tissues.
Pulit-Penaloza et al. 2026 - Nature Communications. Advancing A(H5N1) influenza risk assessment in ferrets through comparative evaluation of airborne virus shedding patterns R code.
Neural network pruning for finding a sparse computational model for controlling a biological motor task.
A computational pipeline for analyzing tissue regeneration in volumetric muscle loss treatment studies. Enables automated processing of histological and immunohistochemical whole slide images to quantify tissue components, inflammatory responses, and regenerative markers. Provides standardized analysis of spatial tissue heterogeneity.
Kieran et al. (Accepted) - PLoS Computational Biology.
Kieran et al. 2024 - Communication Biology - R code for machine learning in influenza infected ferrets
Analysis for the manuscript: 'Coral adaptation to climate change: Meta-analysis reveals high heritability across multiple traits', published in Global Change Biology
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