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Update lock files.

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If the CI tasks fail, create a new branch based on this PR and add the required fixes to that branch.

@skrub-bot skrub-bot force-pushed the auto-update-pixi-lock-file branch from 12c254e to 17bc4f5 Compare December 22, 2025 05:15
@glemaitre
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Uhm I see the following error:

Fatal Python error: Fatal Python error: Segmentation fault

Current thread 0x00007f42d6fa3740 (most recent call first):
  File "/home/circleci/project/skrub/_fast_hash.py"Segmentation fault

Current thread 0x00007f8b07c78740 (most recent call first):
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/numpy/_core/numeric.py", line 89 in ngram_min_hash
  File , line "798/home/circleci/project/skrub/_minhash_encoder.py in "correlate, line 
186  File  in "_get_fast_hash
/home/circleci/project/skrub/_fast_hash.py  File ""/home/circleci/project/skrub/_minhash_encoder.py, line "89 in , line 212ngram_min_hash in 
_compute_hash_batched  File 
"  File /home/circleci/project/skrub/_minhash_encoder.py""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 186, line  in 1914_get_fast_hash in 
_get_sequential_output  File 
"  File "/home/circleci/project/skrub/_minhash_encoder.py/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py"", line , line 1986212 in  in __call___compute_hash_batched

  File "  File /home/circleci/project/skrub/_minhash_encoder.py""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py, line "288 in , line transform1914
 in   File _get_sequential_output"
/home/circleci/project/skrub/_apply_to_cols.py"  File , line "184/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py in transform"
  File , line 1986" in /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py__call__"
, line   File 316 in "wrapped/home/circleci/project/skrub/_minhash_encoder.py
"  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/base.py", line 288, line  in 907 in transformfit_transform

  File   File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py""/home/circleci/project/skrub/_apply_to_cols.py, line "316 in , line wrapped
  File "/home/circleci/project/skrub/_apply_to_cols.py"184, line  in 638transform in 
_fit_transform_column  File 
  File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 1914/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py in _get_sequential_output
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py"", line , line 1986316 in __call__ in 
  File wrapped"
/home/circleci/project/skrub/_apply_to_cols.py  File "", line 516/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/base.py in "fit_transform
  File , line "907/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py" in , line 316fit_transform in 
wrapped
  File   File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/pipeline.py"", line , line 3161484 in  in wrapped_fit_transform_one

  File   File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/memory.py"/home/circleci/project/skrub/_apply_to_cols.py, line "326 in , line __call__
638 in   File _fit_transform_column"
/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/pipeline.py"  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py, line "547 in _fit, line 
1914  File  in "_get_sequential_output/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/pipeline.py
"  File , line "677 in /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.pyfit_transform"
  File ", line /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/base.py1986" in , line __call__1336
 in wrapper  File 
"  File /home/circleci/project/skrub/_apply_to_cols.py""/home/circleci/project/skrub/_table_vectorizer.py", line , line 857516 in fit_transform in 
  File fit_transform"
/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py"  File , line "316 in /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.pywrapped"
, line   File 316" in /home/circleci/project/skrub/_apply_to_frame.pywrapped"
  File , line 196" in fit_transform/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/pipeline.py
  File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py, line "1484, line  in 316_fit_transform_one in 
wrapped
  File   File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/memory.py/home/circleci/project/skrub/_data_ops/_data_ops.py"", line 326 in , line __call__1339
 in   File eval"
/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/pipeline.py  File ""/home/circleci/project/skrub/_data_ops/_evaluation.py, line "547 in , line 331_fit in 
_eval_data_op
  File   File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/pipeline.py/home/circleci/project/skrub/_data_ops/_evaluation.py"", line 677, line  in 319fit_transform in 
handle_data_op  File 
"  File /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/base.py""/home/circleci/project/skrub/_data_ops/_evaluation.py", line , line 1336161 in  in wrapperstep

  File   File ""/home/circleci/project/skrub/_data_ops/_evaluation.py"/home/circleci/project/skrub/_table_vectorizer.py, line "179 in , line run857
 in   File fit_transform"
/home/circleci/project/skrub/_data_ops/_evaluation.py"  File , line "285/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py in "run, line 
316  File  in "wrapped/home/circleci/project/skrub/_data_ops/_evaluation.py
"  File , line "449/home/circleci/project/skrub/_apply_to_frame.py in "evaluate
, line   File 196" in /home/circleci/project/skrub/_data_ops/_estimator.pyfit_transform"
, line   File 513" in /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/_set_output.py"_eval_in_mode, line 
316  File  in "wrapped/home/circleci/project/skrub/_data_ops/_estimator.py
"  File , line 167" in /home/circleci/project/skrub/_data_ops/_data_ops.pyf"
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/model_selection/_validation.py, line "1339 in eval, line 
833  File  in "_fit_and_score/home/circleci/project/skrub/_data_ops/_evaluation.py
  File "", line /home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/parallel.py331" in _eval_data_op, line 
184 in   File __call__
"  File /home/circleci/project/skrub/_data_ops/_evaluation.py""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line , line 319607 in  in handle_data_op
__call__
  File   File ""/home/circleci/project/skrub/_data_ops/_evaluation.py/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/externals/loky/process_executor.py"", line 291, line  in 161__call__
 in   File step"
/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/externals/loky/process_executor.py"  File ", line /home/circleci/project/skrub/_data_ops/_evaluation.py490" in , line _process_worker
179  File  in "run/home/circleci/project/.pixi/envs/doc/lib/python3.12/multiprocessing/process.py
"  File , line 108" in /home/circleci/project/skrub/_data_ops/_evaluation.pyrun
"  File , line "285/home/circleci/project/.pixi/envs/doc/lib/python3.12/multiprocessing/process.py" in run, line 
314  File  in _bootstrap"
/home/circleci/project/skrub/_data_ops/_evaluation.py  File ""/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/externals/loky/backend/popen_loky_posix.py, line "449 in , line evaluate180
 in   File <module>
"  File /home/circleci/project/skrub/_data_ops/_estimator.py""<frozen runpy>, line "513, line  in 88 in _eval_in_mode_run_code

  File   File ""/home/circleci/project/skrub/_data_ops/_estimator.py<frozen runpy>"", line , line 198167 in  in _run_module_as_main
f
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/model_selection/_validation.py", line 833 in _fit_and_score
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/parallel.py", line 184 in __call__
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 607 in __call__
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/externals/loky/process_executor.py", line 291 in __call__
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/externals/loky/process_executor.py", line 490 in _process_worker
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/multiprocessing/process.py", line 108 in run
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/multiprocessing/process.py", line 314 in _bootstrap
  File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/externals/loky/backend/popen_loky_posix.py", line 180 in <module>
  File "<frozen runpy>", line 88 in _run_code
  File "<frozen runpy>", line 198 in _run_module_as_main

Extension modules: numpy._core._multiarray_umath, numpy.linalg._umath_linalg, sklearn.__check_build._check_build, 
Extension modules: _cyutilitynumpy._core._multiarray_umath, scipy._cyutility, , scipy._lib._ccallback_cnumpy.linalg._umath_linalg, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, sklearn.__check_build._check_build, numpy.random._pcg64, , numpy.random._generator_cyutility, numpy.random._mt19937, scipy._cyutility, numpy.random._philox, scipy._lib._ccallback_c, numpy.random._sfc64, numpy.random.mtrand, scipy.sparse._sparsetools, numpy.random._common, _csparsetools, numpy.random.bit_generator, scipy.sparse._csparsetools, numpy.random._bounded_integers, , numpy.random._pcg64scipy.special._ufuncs_cxx, , numpy.random._generatorscipy.special._ellip_harm_2, , scipy.special._special_ufuncsnumpy.random._mt19937, , scipy.special._gufuncsnumpy.random._philox, , scipy.special._ufuncsnumpy.random._sfc64, , scipy.special._specfunnumpy.random.mtrand, scipy.special._comb, scipy.sparse._sparsetools, scipy.linalg._fblas, _csparsetools, scipy.linalg._flapack, scipy.sparse._csparsetools, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.special._ufuncs_cxx, scipy.linalg._solve_toeplitz, scipy.special._ellip_harm_2, scipy.linalg._decomp_lu_cython, scipy.special._special_ufuncs, scipy.linalg._matfuncs_schur_sqrtm, scipy.special._gufuncs, scipy.linalg._matfuncs_expm, scipy.special._ufuncs, scipy.linalg._linalg_pythran, scipy.special._specfun, scipy.linalg.cython_blas, scipy.special._comb, scipy.linalg._decomp_update, scipy.linalg._fblas, scipy.sparse.linalg._dsolve._superlu, , scipy.linalg._flapackscipy.sparse.linalg._eigen.arpack._arpack, , scipy.linalg.cython_lapackscipy.sparse.linalg._propack._spropack, , scipy.sparse.linalg._propack._dpropackscipy.linalg._cythonized_array_utils, , scipy.sparse.linalg._propack._cpropackscipy.linalg._solve_toeplitz, , scipy.sparse.linalg._propack._zpropackscipy.linalg._decomp_lu_cython, , scipy.linalg._matfuncs_schur_sqrtmscipy.spatial._ckdtree, , scipy.linalg._matfuncs_expmscipy._lib.messagestream, , scipy.linalg._linalg_pythranscipy.spatial._qhull, , scipy.spatial._voronoiscipy.linalg.cython_blas, , scipy.spatial._hausdorffscipy.linalg._decomp_update, scipy.spatial._distance_wrap, scipy.sparse.linalg._dsolve._superlu, scipy.spatial.transform._rotation, scipy.sparse.linalg._eigen.arpack._arpack, scipy.spatial.transform._rigid_transform, scipy.sparse.linalg._propack._spropack, scipy.optimize._group_columns, scipy.sparse.linalg._propack._dpropack, scipy.optimize._trlib._trlib, scipy.sparse.linalg._propack._cpropack, , scipy.optimize._lbfgsbscipy.sparse.linalg._propack._zpropack, , _moduleTNCscipy.spatial._ckdtree, scipy.optimize._moduleTNC, scipy._lib.messagestream, , scipy.optimize._slsqplibscipy.spatial._qhull, , scipy.optimize._minpackscipy.spatial._voronoi, , scipy.optimize._lsq.givens_eliminationscipy.spatial._hausdorff, , scipy.optimize._zerosscipy.spatial._distance_wrap, , scipy._lib._uarray._uarrayscipy.spatial.transform._rotation, , scipy.spatial.transform._rigid_transformscipy.linalg._decomp_interpolative, , scipy.optimize._bglu_densescipy.optimize._group_columns, scipy.optimize._lsap, scipy.optimize._trlib._trlib, scipy.optimize._direct, scipy.optimize._lbfgsb, scipy.integrate._odepack, _moduleTNC, scipy.integrate._quadpack, scipy.optimize._moduleTNC, scipy.integrate._vode, scipy.optimize._slsqplib, scipy.integrate._dop, scipy.optimize._minpack, scipy.integrate._lsoda, scipy.optimize._lsq.givens_elimination, scipy.interpolate._fitpack, scipy.optimize._zeros, scipy.interpolate._dfitpack, scipy._lib._uarray._uarray, scipy.interpolate._dierckx, scipy.linalg._decomp_interpolative, scipy.interpolate._ppoly, scipy.optimize._bglu_dense, , scipy.interpolate._interpndscipy.optimize._lsap, scipy.interpolate._rbfinterp_pythran, scipy.optimize._direct, scipy.interpolate._rgi_cython, scipy.integrate._odepack, scipy.special.cython_special, scipy.integrate._quadpack, scipy.stats._stats, scipy.integrate._vode, scipy.stats._biasedurn, scipy.integrate._dop, scipy.stats._stats_pythran, scipy.integrate._lsoda, scipy.stats._levy_stable.levyst, scipy.interpolate._fitpack, scipy.stats._ansari_swilk_statistics, scipy.interpolate._dfitpack, scipy.sparse.csgraph._tools, scipy.interpolate._dierckx, scipy.sparse.csgraph._shortest_path, scipy.interpolate._ppoly, scipy.sparse.csgraph._traversal, scipy.interpolate._interpnd, scipy.sparse.csgraph._min_spanning_tree, scipy.interpolate._rbfinterp_pythran, scipy.sparse.csgraph._flow, scipy.interpolate._rgi_cython, scipy.sparse.csgraph._matching, scipy.special.cython_special, scipy.sparse.csgraph._reordering, scipy.stats._stats, scipy.stats._sobol, scipy.stats._biasedurn, scipy.stats._qmc_cy, scipy.stats._stats_pythran, scipy.stats._rcont.rcont, scipy.stats._levy_stable.levyst, scipy.stats._qmvnt_cy, scipy.stats._ansari_swilk_statistics, scipy.ndimage._nd_image, , scipy.sparse.csgraph._toolsscipy.ndimage._rank_filter_1d, , scipy.sparse.csgraph._shortest_path_ni_label, , scipy.sparse.csgraph._traversalscipy.ndimage._ni_label, scipy.sparse.csgraph._min_spanning_tree, pyarrow.lib, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, pandas._libs.tslibs.ccalendar, scipy.sparse.csgraph._reordering, pandas._libs.tslibs.np_datetime, scipy.stats._sobol, pandas._libs.tslibs.dtypes, scipy.stats._qmc_cy, pandas._libs.tslibs.base, scipy.stats._rcont.rcont, pandas._libs.tslibs.nattype, scipy.stats._qmvnt_cy, scipy.ndimage._nd_image, pandas._libs.tslibs.timezones, scipy.ndimage._rank_filter_1d, pandas._libs.tslibs.fields, _ni_label, pandas._libs.tslibs.timedeltas, scipy.ndimage._ni_label, pandas._libs.tslibs.tzconversion, , pyarrow.libpandas._libs.tslibs.timestamps, pandas._libs.properties, pandas._libs.tslibs.ccalendar, pandas._libs.tslibs.offsets, pandas._libs.tslibs.np_datetime, pandas._libs.tslibs.strptime, pandas._libs.tslibs.dtypes, pandas._libs.tslibs.parsing, pandas._libs.tslibs.base, pandas._libs.tslibs.conversion, pandas._libs.tslibs.nattype, pandas._libs.tslibs.period, , pandas._libs.tslibs.timezonespandas._libs.tslibs.vectorized, , pandas._libs.ops_dispatchpandas._libs.tslibs.fields, , pandas._libs.tslibs.timedeltaspandas._libs.missing, , pandas._libs.tslibs.tzconversionpandas._libs.hashtable, , pandas._libs.tslibs.timestampspandas._libs.algos, , pandas._libs.intervalpandas._libs.properties, , pandas._libs.tslibs.offsetspandas._libs.lib, pandas._libs.tslibs.strptime, pyarrow._compute, pandas._libs.tslibs.parsing, pandas._libs.ops, pandas._libs.tslibs.conversion, pandas._libs.hashing, pandas._libs.tslibs.period, pandas._libs.arrays, pandas._libs.tslibs.vectorized, pandas._libs.tslib, pandas._libs.ops_dispatch, pandas._libs.sparse, pandas._libs.missing, pandas._libs.internals, pandas._libs.hashtable, , pandas._libs.indexingpandas._libs.algos, , pandas._libs.indexpandas._libs.interval, , pandas._libs.writerspandas._libs.lib, , pandas._libs.joinpyarrow._compute, pandas._libs.ops, pandas._libs.window.aggregations, pandas._libs.hashing, pandas._libs.window.indexers, pandas._libs.arrays, pandas._libs.reshape, pandas._libs.tslib, pandas._libs.groupby, pandas._libs.sparse, pandas._libs.json, pandas._libs.internals, pandas._libs.parsers, pandas._libs.indexing, pandas._libs.index, pandas._libs.testing, pandas._libs.writers, , pandas._libs.joinsklearn._cyutility, sklearn.utils._isfinite, , pandas._libs.window.aggregationssklearn.utils.sparsefuncs_fast, pandas._libs.window.indexers, sklearn.utils.murmurhash, , sklearn.utils._openmp_helperspandas._libs.reshape, , sklearn.metrics.cluster._expected_mutual_info_fastpandas._libs.groupby, , sklearn.metrics._dist_metricspandas._libs.json, , sklearn.metrics._pairwise_distances_reduction._datasets_pairpandas._libs.parsers, sklearn.utils._cython_blas, pandas._libs.testing, sklearn.metrics._pairwise_distances_reduction._base, sklearn._cyutility, sklearn.metrics._pairwise_distances_reduction._middle_term_computer, , sklearn.utils._isfinitesklearn.utils._heap, , sklearn.utils.sparsefuncs_fastsklearn.utils._sorting, , sklearn.utils.murmurhashsklearn.metrics._pairwise_distances_reduction._argkmin, sklearn.utils._openmp_helpers, sklearn.metrics._pairwise_distances_reduction._argkmin_classmode, sklearn.metrics.cluster._expected_mutual_info_fast, sklearn.utils._vector_sentinel, sklearn.metrics._dist_metrics, sklearn.metrics._pairwise_distances_reduction._radius_neighbors, sklearn.metrics._pairwise_distances_reduction._datasets_pair, sklearn.metrics._pairwise_distances_reduction._radius_neighbors_classmode, sklearn.utils._cython_blas, sklearn.metrics._pairwise_fast, sklearn.metrics._pairwise_distances_reduction._base, sklearn.preprocessing._csr_polynomial_expansion, sklearn.metrics._pairwise_distances_reduction._middle_term_computer, sklearn.preprocessing._target_encoder_fast, sklearn.utils._heap, sklearn.utils._random, sklearn.utils._sorting, sklearn.metrics._pairwise_distances_reduction._argkmin, regex._regex, sklearn.metrics._pairwise_distances_reduction._argkmin_classmode, sklearn.utils._vector_sentinel, sklearn.metrics._pairwise_distances_reduction._radius_neighbors, yaml._yaml, sklearn.metrics._pairwise_distances_reduction._radius_neighbors_classmode, _brotli, sklearn.metrics._pairwise_fast, backports.zstd._zstd, sklearn.preprocessing._csr_polynomial_expansion, sklearn.preprocessing._target_encoder_fast, markupsafe._speedups, sklearn.utils._random, , regex._regexPIL._imaging, kiwisolver._cext, yaml._yaml, _brotli, _loss, , sklearn._loss._lossbackports.zstd._zstd, sklearn._isotonic, sklearn.utils._seq_dataset, sklearn.linear_model._cd_fast, markupsafe._speedups, sklearn.utils.arrayfuncs, sklearn.linear_model._sag_fast, sklearn.svm._liblinear, PIL._imaging, sklearn.svm._libsvm, sklearn.svm._libsvm_sparse, kiwisolver._cext, sklearn.utils._weight_vector, sklearn.linear_model._sgd_fast, , sklearn.utils._fast_dict_loss, sklearn.cluster._hierarchical_fast, sklearn._loss._loss, sklearn.cluster._k_means_common, sklearn._isotonic, sklearn.cluster._k_means_elkan, sklearn.utils._seq_dataset, sklearn.cluster._k_means_lloyd, sklearn.linear_model._cd_fast, sklearn.cluster._k_means_minibatch, sklearn.utils.arrayfuncs, sklearn.cluster._dbscan_inner, sklearn.linear_model._sag_fast, sklearn.neighbors._partition_nodes, sklearn.svm._liblinear, sklearn.neighbors._ball_tree, sklearn.svm._libsvm, sklearn.neighbors._kd_tree, sklearn.svm._libsvm_sparse, sklearn.decomposition._online_lda_fast, sklearn.utils._weight_vector, sklearn.decomposition._cdnmf_fast, sklearn.linear_model._sgd_fast, sklearn.cluster._hdbscan._tree, sklearn.utils._fast_dict, sklearn.cluster._hdbscan._linkage, sklearn.cluster._hierarchical_fast, sklearn.cluster._hdbscan._reachability, sklearn.cluster._k_means_common, sklearn.tree._utils, sklearn.cluster._k_means_elkan, , sklearn.tree._treesklearn.cluster._k_means_lloyd, , sklearn.tree._partitionersklearn.cluster._k_means_minibatch, , sklearn.tree._splittersklearn.cluster._dbscan_inner, , sklearn.tree._criterionsklearn.neighbors._partition_nodes, , sklearn.neighbors._quad_treesklearn.neighbors._ball_tree, , sklearn.manifold._barnes_hut_tsnesklearn.neighbors._kd_tree, , sklearn.manifold._utilssklearn.decomposition._online_lda_fast, sklearn.decomposition._cdnmf_fast, sklearn.ensemble._gradient_boosting, , sklearn.cluster._hdbscan._treesklearn.ensemble._hist_gradient_boosting.common, , sklearn.cluster._hdbscan._linkagesklearn.ensemble._hist_gradient_boosting._gradient_boosting, sklearn.cluster._hdbscan._reachability, sklearn.ensemble._hist_gradient_boosting._binning, , sklearn.tree._utilssklearn.ensemble._hist_gradient_boosting._bitset, sklearn.tree._tree, sklearn.ensemble._hist_gradient_boosting.histogram, sklearn.tree._partitioner, sklearn.ensemble._hist_gradient_boosting._predictor, sklearn.tree._splitter, sklearn.ensemble._hist_gradient_boosting.splitting, sklearn.tree._criterion, scipy.cluster._vq, sklearn.neighbors._quad_tree, scipy.cluster._hierarchy, sklearn.manifold._barnes_hut_tsne, scipy.cluster._optimal_leaf_ordering, sklearn.manifold._utils, sklearn.feature_extraction._hashing_fast, sklearn.ensemble._gradient_boosting (total: 215)
, sklearn.ensemble._hist_gradient_boosting.common, sklearn.ensemble._hist_gradient_boosting._gradient_boosting, sklearn.ensemble._hist_gradient_boosting._binning, sklearn.ensemble._hist_gradient_boosting._bitset, sklearn.ensemble._hist_gradient_boosting.histogram, sklearn.ensemble._hist_gradient_boosting._predictor, sklearn.ensemble._hist_gradient_boosting.splitting, scipy.cluster._vq, scipy.cluster._hierarchy, scipy.cluster._optimal_leaf_ordering, sklearn.feature_extraction._hashing_fast (total: 215)
WARNING: 
../examples/data_ops/1120_multiple_tables.py unexpectedly failed to execute correctly:

    Traceback (most recent call last):
      File "/home/circleci/project/examples/data_ops/1120_multiple_tables.py", line 184, in <module>
        search = predictions.skb.make_randomized_search(
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/circleci/project/skrub/_data_ops/_skrub_namespace.py", line 2323, in make_randomized_search
        return search.fit(
               ^^^^^^^^^^^
      File "/home/circleci/project/skrub/_data_ops/_estimator.py", line 932, in fit
        search.fit(X, y)
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/base.py", line 1336, in wrapper
        return fit_method(estimator, *args, **kwargs)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/model_selection/_search.py", line 1053, in fit
        self._run_search(evaluate_candidates)
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/model_selection/_search.py", line 2002, in _run_search
        evaluate_candidates(
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/model_selection/_search.py", line 999, in evaluate_candidates
        out = parallel(
              ^^^^^^^^^
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/sklearn/utils/parallel.py", line 91, in __call__
        return super().__call__(iterable_with_config_and_warning_filters)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 2072, in __call__
        return output if self.return_generator else list(output)
                                                    ^^^^^^^^^^^^
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 1682, in _get_outputs
        yield from self._retrieve()
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 1784, in _retrieve
        self._raise_error_fast()
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 1859, in _raise_error_fast
        error_job.get_result(self.timeout)
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 758, in get_result
        return self._return_or_raise()
               ^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/circleci/project/.pixi/envs/doc/lib/python3.12/site-packages/joblib/parallel.py", line 773, in _return_or_raise
        raise self._result
    joblib.externals.loky.process_executor.TerminatedWorkerError: A worker process managed by the executor was unexpectedly terminated. This could be caused by a segmentation fault while calling the function or by an excessive memory usage causing the Operating System to kill the worker.

    The exit codes of the workers are {SIGSEGV(-11), SIGSEGV(-11)}
    Detailed tracebacks of the workers should have been printed to stderr in the executor process if faulthandler was not disabled.

It does not look like a timeout.

@skrub-bot skrub-bot force-pushed the auto-update-pixi-lock-file branch from 17bc4f5 to 0b93911 Compare December 29, 2025 05:20
@skrub-bot skrub-bot force-pushed the auto-update-pixi-lock-file branch from 0b93911 to 5143265 Compare January 5, 2026 05:27
@skrub-bot skrub-bot force-pushed the auto-update-pixi-lock-file branch from 5143265 to ca131aa Compare January 12, 2026 05:21
@rcap107
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rcap107 commented Jan 12, 2026

/It looks like doc generation on CI is running out of time, and min deps are failing because of a deprecation warning in matplotlib (meaning that we will need to wait until they backport a fix for that).

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4 participants