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@rsinghlab

Singh Lab @ Brown

Repository for projects developed in the lab

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  1. MADDi MADDi Public

    This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

    Jupyter Notebook 117 21

  2. SCOT SCOT Public

    Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

    Jupyter Notebook 79 18

  3. AltumAge AltumAge Public

    Jupyter Notebook 40 10

  4. scNODE scNODE Public

    scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

    Jupyter Notebook 30 6

  5. GNN-Tumor-Seg GNN-Tumor-Seg Public

    Using Graph Neural Networks to Segment MRIs of Brain Tumors

    Python 29 8

  6. K-Paths K-Paths Public

    Official Implementation of K-Paths: Reasoning over Graph Paths for Drug Repurposing and Drug Interaction Prediction.

    Python 18 3

Repositories

Showing 10 of 30 repositories
  • TimeFlies Public

    Machine learning framework for aging analysis in Drosophila single-cell RNA-seq data. Deep learning models with SHAP interpretability, batch correction, and comprehensive research workflows.

    rsinghlab/TimeFlies’s past year of commit activity
    Python 2 1 0 0 Updated Feb 28, 2026
  • Persona_Paradox Public

    This is the official repository for 'The Persona Paradox: Medical Personas as Behavioral Priors in Clinical Language Models.' This project investigates how distinct medical personas influence LLM behavior and safety alignment across complex clinical scenarios.

    rsinghlab/Persona_Paradox’s past year of commit activity
    Python 1 0 1 0 Updated Feb 15, 2026
  • DRIFT Public

    Diffusion-based Representation Integration for Foundation models in spatial Transcriptomics

    rsinghlab/DRIFT’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jan 21, 2026
  • scContrast Public

    A contrastive learning based approach to learn universal cell representation

    rsinghlab/scContrast’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Aug 18, 2025
  • STING Public

    Spatial Transcriptomics cluster Inference with Nested GNNs

    rsinghlab/STING’s past year of commit activity
    Python 0 1 0 0 Updated Aug 7, 2025
  • scMultiNODE Public

    scMultiNODE: Temporal Single-Cell Data Integration across Unaligned Modalities

    rsinghlab/scMultiNODE’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Aug 3, 2025
  • CoRNN Public

    Compartment prediction using Recurrent Neural Network

    rsinghlab/CoRNN’s past year of commit activity
    Python 2 1 1 0 Updated Jul 25, 2025
  • PiCME Public

    Pipeline for Contrastive Modality Evaluation and Encoding in the MIMIC Dataset

    rsinghlab/PiCME’s past year of commit activity
    Python 4 0 0 0 Updated Jul 8, 2025
  • K-Paths Public

    Official Implementation of K-Paths: Reasoning over Graph Paths for Drug Repurposing and Drug Interaction Prediction.

    rsinghlab/K-Paths’s past year of commit activity
    Python 18 3 0 0 Updated Jul 8, 2025
  • gnn_microscopy_segment Public

    Memory Efficient Semantic Segmentation of Large Microscopy Images Using Graph-based Neural Networks

    rsinghlab/gnn_microscopy_segment’s past year of commit activity
    Python 7 0 0 0 Updated Jul 3, 2025
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