Alexhillsley/refactor#14

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ahillsley wants to merge 12 commits into

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alexhillsley/refactor

Commits on Jun 10, 2026

Restructure combination/: drop deprecated config path, group supplemental + add-on modules

Alexander Hillsley
and
claude
committed
Add config entry point + external signal_paths ingest to pca_optimization

Alexander Hillsley
and
claude
committed
Deprecate eval subdir and remove its tests

Alexander Hillsley
and
claude
committed
Unify CSV->AnnData processing into process_features_csv

Alexander Hillsley
and
claude
committed
Add end-to-end test scripts for the feature pipelines

Alexander Hillsley
and
claude
committed
Fix stale / personal hardcoded config paths in scoring + overlays

Alexander Hillsley
and
claude
committed

Commits on Jun 11, 2026

Score CORUM/CHAD/EBI consistency independently

Alexander Hillsley
and
claude
committed
Fix stale icd.ops gene_clusters paths -> icd.fast.ops

Alexander Hillsley
and
claude
committed

Commits on Jun 24, 2026

Merge remote-tracking branch 'origin/main' into alexhillsley/refactor
Alexander Hillsley
committed
Remove deprecated base_dataset, embeddings, and move_links modules

Alexander Hillsley
and
claude
committed
remove iss_drift_fix.py from the tracked repo, it was a 1 off script and should not be aprt of the public repo
Alexander Hillsley
committed
Remove deprecated post_process/map mAP re-export wrapper

Alexander Hillsley
and
claude
committed