GitHub - prob-ml/XeniumCluster: Clustering Xenium data with texture.

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
tests		tests
utils		utils
xenium		xenium
.gitignore		.gitignore
BayXenSmooth_wss.ipynb		BayXenSmooth_wss.ipynb
BayesSpace.ipynb		BayesSpace.ipynb
BayesSpace.py		BayesSpace.py
BayesSpace_Synthetic.ipynb		BayesSpace_Synthetic.ipynb
EDA.ipynb		EDA.ipynb
GSEA.ipynb		GSEA.ipynb
Hierarchical.ipynb		Hierarchical.ipynb
KMeans.ipynb		KMeans.ipynb
Leiden.ipynb		Leiden.ipynb
Louvain.ipynb		Louvain.ipynb
README.md		README.md
SVI.ipynb		SVI.ipynb
SVI.py		SVI.py
SVI_Approx.ipynb		SVI_Approx.ipynb
SVI_Approx.py		SVI_Approx.py
SVI_Approx_Experiment.py		SVI_Approx_Experiment.py
SVI_Approx_Synthetic.ipynb		SVI_Approx_Synthetic.ipynb
SVI_Approx_Synthetic.py		SVI_Approx_Synthetic.py
SVI_Cells.ipynb		SVI_Cells.ipynb
SVI_Experiment.py		SVI_Experiment.py
SVI_VAE.ipynb		SVI_VAE.ipynb
SVI_VAE.py		SVI_VAE.py
VSBC.ipynb		VSBC.ipynb
VSBC.py		VSBC.py
cluster_metrics.ipynb		cluster_metrics.ipynb
cluster_metrics.py		cluster_metrics.py
cluster_plotting.ipynb		cluster_plotting.ipynb
dlpfc.ipynb		dlpfc.ipynb
mclust.R		mclust.R
mclust.ipynb		mclust.ipynb
model.py		model.py
poetry.lock		poetry.lock
pyproject.toml		pyproject.toml
running_tally_normalized.pth		running_tally_normalized.pth
temporary_pca_file.csv		temporary_pca_file.csv
weak_v_strong_prior.ipynb		weak_v_strong_prior.ipynb
xenium_BayesSpace.R		xenium_BayesSpace.R
xenium_breast_data.ipynb		xenium_breast_data.ipynb
xenium_cluster.py		xenium_cluster.py
xenium_skin_data.ipynb		xenium_skin_data.ipynb
xenium_spot_size.ipynb		xenium_spot_size.ipynb