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  1. CiliaDetect2.0 CiliaDetect2.0 Public

    THE tool for detecting cilia in microscopy images. Entirely graphical interface for non-programmers

    MATLAB 1

  2. GLM-HMM-MATLAB GLM-HMM-MATLAB Public

    This toolbox implements a Generalized Linear Model Hidden Markov Model (GLM-HMM) in MATLAB, replicating the core features of Ashwood et al. (2022). It allows fitting discrete latent states that gov…

    MATLAB 1

  3. TrigVideoCapture TrigVideoCapture Public

    Display and Save Video from Blackfly Camera, Digital trigger Analog and metadata information saved trought DAQmx or Arduino. Initially designed for neuroscience experiments

    Python 1

  4. FlowkeyPracticePDF FlowkeyPracticePDF Public

    A tiny GUI that turns a locally saved Flowkey page into a clean, paginated PDF of the sheet music.

    Python 1

  5. CiliaDetect CiliaDetect Public

    A semi-automated tool for fast detection and quantification of cilia from microscopy image stacks.

    MATLAB

  6. Treat2p Treat2p Public

    Reliable neuropil and drift correction of 2p calcium imaging data. Computation of Df/F0 or Z-score optimized intepretatbility (SNR) and spike inference

    MATLAB