Replaced scran::findMarkers in findDoubletClusters() with a homebrew version.#143
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…version. findMarkers is now deprecated and its replacement does not report p-values. To avoid changes to the results, we implement a homebrew version of the pairwise t-tests based on scrapper's modelGeneVariances that is a drop-in substitute.
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As promised. Passes the associated tests though I haven't run
R CMD check.If you use
aggregateAcrossCells(), you could get the appropriate statistics to implement apairwise_binom()equivalent tobinom.testfor your other use offindMarkers().