Napari plugin to visualize feature measurements on label images
The napari classifier plugin that started as part of this repository has been polished & is now published here:
Github, napari hub
This plugin currently contains two widgets:
-
Feature visualization
-
Calculation of scikit-image regionprops
Features calculated with the regionprops widget can be saved to csv and visualized using the feature_vis widget.
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
This plugin is not available via pipy yet. So far, git clone it and pip install it using:
cd napari-feature-visualization
pip install .
For full functionality, recent bug-fixes in magicgui are required that have not been released via pipy yet. To get the pre-release version, install them directly:
pip install git+https://github.com/napari/magicgui.git
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-feature-visualization" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.
Feature visualization widget: Joel Lüthi
Classifier widgets: Joel Lüthi & Max Hess
Regionprops widget: Robert Haase
And support by people from the napari & iamge.sc community like Nicholas Sofroniew, Juan Nunez Iglesias, Draga Doncila Pop, Talley Lambert and many more