v0.3.2

PopGenSims v0.3.2

• Added new sample method to create simulated samples while keeping the original proportions of samples in each population.

Diff since v0.3.1

v0.3.1

PopGenSims v0.3.1

Diff since v0.3.0

v0.3.1

No changes, just linked with Zenodo

Full Changelog: v0.3.0...0.3.1

v0.3.0

PopGenSims v0.3.0

Diff since v0.2.0

v0.2.0

PopGenSims v0.2.0

Breaking Change

• simulate_sibship syntax replaced keywords n = Int and relationship = "fullsib" with a keyword for each relationship type:
  • fullsib::Int
  • halfsib::Int
  • unrelated::Int
  • parentoffspring::Int

So, the new function syntax looks like:

sims = simulate_sibship(popdata, fullsib = 50, halfsib = 20)

The result being that you can perform multiple simulations in one function call without having to merge the results manually!

Diff since v0.1.0

v0.1.0

PopGenSims v0.1.0

Diff since v0.0.4

Merged pull requests:

• CompatHelper: bump compat for "PopGen" to "0.6" (#22) (@github-actions[bot])
• CompatHelper: bump compat for "DataFrames" to "1.0" (#23) (@github-actions[bot])
• CompatHelper: bump compat for "DataFrames" to "1.1" (#24) (@github-actions[bot])
• Release (#26) (@pdimens)

v0.0.4

PopGenSims v0.0.4

Diff since v0.0.3

Breaking changes

• none

Nonbreaking Changes

• Randoms.jl is now a dependency
• updated TagBot.yml for non-cron triggering

Bugfixes

• incorrect ploidy hardcoding in simulate()
• docstring for simulate_sample
• type inference for allele_pool(::PopData)
• correctly import allele_freq from PopGen.jl
• correctly import Weights from StatsBase.jl

New Features

• unit testing via github-actions CI for all functions
• all instances of rand() and sample() now use Xorshifts.Xoroshiro128Star() from RandomNumbers instead of MersenneTwister() from Base

Merged pull requests:

• CompatHelper: bump compat for "PooledArrays" to "1.1" (#18) (@github-actions[bot])
• CompatHelper: add new compat entry for "RandomNumbers" at version "1.4" (#19) (@github-actions[bot])
• release 0.0.4 (#20) (@pdimens)

v0.0.3

PopGenSims v0.0.3

Diff since v0.0.2

Closed issues:

• push new release (#8)

Merged pull requests:

• CompatHelper: bump compat for "PopGen" to "0.4" (#12) (@github-actions[bot])
• CompatHelper: bump compat for "StaticArrays" to "1.0" (#13) (@github-actions[bot])
• merge dev into release (#14) (@pdimens)

v0.0.2

PopGenSims v0.0.2

• add sibship crosses
• change cross() API

Merged pull requests:

• CompatHelper: add new compat entry for "DataFrames" at version "0.21" (#1) (@github-actions[bot])
• CompatHelper: add new compat entry for "InvertedIndices" at version "1.0" (#2) (@github-actions[bot])
• CompatHelper: add new compat entry for "PopGen" at version "0.0.3" (#3) (@github-actions[bot])
• CompatHelper: add new compat entry for "PooledArrays" at version "0.5" (#4) (@github-actions[bot])
• CompatHelper: add new compat entry for "StatsBase" at version "0.33" (#5) (@github-actions[bot])
• CompatHelper: add new compat entry for "StaticArrays" at version "0.12" (#6) (@github-actions[bot])
• fix metadata (#7) (@pdimens)