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    • HTML
      MIT License
      111000Updated Apr 22, 2026Apr 22, 2026
    • skater

      Public
      SKATE R Utilities
      TeX
      Other
      51000Updated Mar 7, 2026Mar 7, 2026
    • pracpac

      Public
      Practical R Packaging with Docker
      R
      Other
      13930Updated Sep 19, 2025Sep 19, 2025
    • Flu Scenario Modeling Hub
      R
      MIT License
      14000Updated Sep 5, 2025Sep 5, 2025
    • metscale

      Public
      MetScale: snakemake workflows to scale metagenome analyses
      Python
      BSD 3-Clause "New" or "Revised" License
      91972Updated May 15, 2025May 15, 2025
    • Flu Scenario Modeling Hub
      R
      28000Updated Feb 5, 2025Feb 5, 2025
    • mixder

      Public
      Mixture deconvolution workflow for Kintelligence SNPs
      R
      Other
      1000Updated Jan 15, 2025Jan 15, 2025
    • fiphde

      Public
      Forecasting Influenza in Support of Public Health Decision Making
      R
      GNU General Public License v3.0
      2460Updated Dec 27, 2024Dec 27, 2024
    • rplanes

      Public
      R package to conduct plausibility analysis of epidemiological signals
      R
      Other
      31030Updated Sep 18, 2024Sep 18, 2024
    • Scale and imputation R recipe steps
      R
      GNU General Public License v3.0
      0000Updated May 28, 2024May 28, 2024
    • SigmaCCS

      Public
      Highly accurate and large-scale collision cross section prediction with graph neural network for compound identification
      Python
      MIT License
      8000Updated May 17, 2024May 17, 2024
    • Containerized model engines for operational flu forecasting
      R
      MIT License
      0000Updated May 16, 2024May 16, 2024
    • R
      Other
      69000Updated May 8, 2024May 8, 2024
    • REID

      Public
      0000Updated Feb 28, 2024Feb 28, 2024
    • Testing SigStore Cosign with different setups
      0000Updated Feb 21, 2024Feb 21, 2024
    • nrc

      Public
      Non-reference concordance
      Shell
      MIT License
      2100Updated Jan 22, 2024Jan 22, 2024
    • goof

      Public
      Super vulnerable todo list application
      JavaScript
      Apache License 2.0
      3.4k000Updated Dec 5, 2023Dec 5, 2023
    • Biosecurity sequence screening training course for bioengineers, partially funded by BioMADE (https://www.biomade.org/biosecurity-training-course)
      BSD 3-Clause "New" or "Revised" License
      1100Updated Nov 8, 2023Nov 8, 2023
    • dsttcode

      Public
      R
      MIT License
      0000Updated May 30, 2023May 30, 2023
    • Deep networks for protein functional inference
      Jupyter Notebook
      Apache License 2.0
      31000Updated Apr 20, 2023Apr 20, 2023
    • Startup script for epi2meLabs for LRN
      Shell
      0000Updated Apr 14, 2023Apr 14, 2023
    • crisflash

      Public
      C
      GNU General Public License v3.0
      5000Updated Apr 13, 2023Apr 13, 2023
    • usethis

      Public
      Set up commonly used 📦 components
      R
      Other
      302000Updated Feb 14, 2023Feb 14, 2023
    • Conda recipes for the bioconda channel.
      Shell
      MIT License
      3.9k000Updated Dec 15, 2022Dec 15, 2022
    • k2v

      Public
      Shell
      GNU General Public License v3.0
      0010Updated Nov 17, 2022Nov 17, 2022
    • DoD AFHSD-IB CLI Forecasting Collaboration
      Other
      5000Updated Oct 28, 2022Oct 28, 2022
    • R
      5000Updated Oct 27, 2022Oct 27, 2022
    • HABSSED Phase I data descriptor manuscript
      TeX
      Creative Commons Attribution Share Alike 4.0 International
      0001Updated Aug 3, 2022Aug 3, 2022
    • Forecasting COVID-19 in the US
      R
      GNU General Public License v3.0
      0030Updated Jul 8, 2022Jul 8, 2022
    • vcferr

      Public
      Probabilistic VCF genotype error simulation
      Python
      MIT License
      1400Updated Jun 3, 2022Jun 3, 2022
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