Repositories list

• evo2-mac

  Public
  Jupyter Notebook

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  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• web-GENE-46100-2026

  Public
  HTML

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  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• web-BIOS-25328-2026

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• web-figure-catalog

  Public
  Web figure catalog

  CSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• quarto-cli

  Public
  Open-source scientific and technical publishing system built on Pandoc.

  JavaScript

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  Other

  •432432 forks•00 stars•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• enformer-predict

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• web-QGT-2026

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• web-GENE-46100

  Public
  GENE46100 course material

  HTML

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  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• scPrediXcan

  Public
  HTML

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  MIT License

  •33 forks•4343 stars•66 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• playground

  Public
  Play with neural networks!

  TypeScript

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  Apache License 2.0

  •2.7k2.7k forks•00 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• web-GENE-46100-2025

  Public
  Archive of GENE-46100 (Deep Learning in Genomics) course materials from 2025

  Jupyter Notebook

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• evo2

  Public
  Genome modeling and design across all domains of life

  Jupyter Notebook

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  Apache License 2.0

  •494494 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2026Mar 20, 2026

• TFXcan-snakemake

  Public
  A repository for the TFXcan pipeline

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• opencode

  Public
  The open source coding agent.

  TypeScript

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  MIT License

  •18k18k forks•00 stars•00 issues•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• TFPred-snakemake

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• metaboxcan

  Public
  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• TFXcan

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• twas-inflation

  Public
  Code used to show inflation in TWAS and other xWAS studies

  R

  •00 forks•55 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• alphagenome_research

  Public
  Research code accompanying AlphaGenome

  Python

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  Apache License 2.0

  •123123 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2026Jan 28, 2026

• PredictDb-nextflow

  Public
  R

  •44 forks•22 stars•22 issues•00 pull requests•Updated Jan 13, 2026Jan 13, 2026

• Training

  Public
  TeX

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  MIT License

  •1111 forks•99 stars•00 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• sabrina-deep-learning-in-genomics

  Public
  https://sabrina-dl.hakyimlab.org

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 19, 2025Aug 19, 2025

• unix_challenges_duoimgo

  Public
  Clone this repository for Unit 3 of Duo Imgo

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 28, 2025Jul 28, 2025

• MetaXcan

  Public
  MetaXcan software and manuscript

  Python

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  Other

  •104104 forks•194194 stars•8282 issues•33 pull requests•Updated Jul 4, 2025Jul 4, 2025

• web-lab-notes-quarto

  Public
  https://lab-notes.hakyimlab.org

  HTML

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  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 3, 2025Jul 3, 2025

• vpi-project

  Public
  Virtual PI project

  Python

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 2, 2025Jul 2, 2025

• GenAI_Agents

  Public
  This repository provides tutorials and implementations for various Generative AI Agent techniques, from basic to advanced. It serves as a comprehensive guide fo…

  Jupyter Notebook

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  Other

  •3.6k3.6k forks•00 stars•00 issues•00 pull requests•Updated Jun 17, 2025Jun 17, 2025

• CL4R1T4S

  Public
  SYSTEM PROMPT TRANSPARENCY FOR ALL - CHATGPT, GEMINI, GROK, CLAUDE, PERPLEXITY, CURSOR, WINDSURF, DEVIN, REPLIT, AND MORE!

  GNU Affero General Public License v3.0

  •4.7k4.7k forks•00 stars•00 issues•00 pull requests•Updated May 27, 2025May 27, 2025

• ezpz

  Public
  Train across all your devices, ezpz 🍋

  Python

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  MIT License

  •77 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2025Apr 28, 2025

• web-course-material

  Public
  https://course-material.hakyimlab.org

  HTML

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  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2025Apr 21, 2025