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    32 repositories

    • lorax

      Public
      a web server that "speaks for the (phylogenetic) trees"
      webserverphylogenetic-treesbioinformatics-pipeline
      webserverphylogenetic-treesbioinformatics-pipelinescientific-computingqueues
      Python
      •
      Other
      •2•1•8•6•Updated Apr 20, 2026Apr 20, 2026

    • cmap-js

      Public
      Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).
      JavaScript
      •
      GNU General Public License v3.0
      •2•4•32•0•Updated Mar 23, 2026Mar 23, 2026

    • DSCensor

      Public
      Visualization and Organization for Assembly and Annotation Data
      JavaScript
      •
      MIT License
      •0•0•11•5•Updated Sep 12, 2025Sep 12, 2025

    • gcvit

      Public
      CViT based tool for visualising VCF files.
      JavaScript
      •
      MIT License
      •8•6•8•0•Updated Mar 9, 2025Mar 9, 2025

    • cvitjs

      Public
      CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.
      JavaScript
      •
      MIT License
      •5•11•2•0•Updated Jan 15, 2021Jan 15, 2021

    • legfed-django-site

      Public
      Django CMS www.LegumeFederation.org
      Python
      •0•0•19•0•Updated Jan 28, 2020Jan 28, 2020

    • bio-format-tools-go

      Public
      Tools for converting common biological data file formats
      Go
      •
      MIT License
      •1•0•0•0•Updated May 1, 2019May 1, 2019

    • tripal_blast

      Public
      LegFed development repository for Tripal Blast. For official releases & documentation go to drupal.org
      PHP
      •
      GNU General Public License v2.0
      •13•1•3•0•Updated Apr 3, 2019Apr 3, 2019

    • jbrowse-docker-slim

      Public
      Minimal Docker image containing JBrowse JavaScript components + NGINX HTTP server
      Dockerfile
      •
      The Unlicense
      •0•0•0•0•Updated Dec 17, 2018Dec 17, 2018

    • blat-server-docker

      Public
      Dockerfile
      •0•1•0•0•Updated Aug 29, 2018Aug 29, 2018

    • qoopty

      Public archive
      A vehicle for queue-backed web services
      Python
      •
      Other
      •0•0•0•0•Updated Jul 20, 2018Jul 20, 2018

    • legfed_gene_families

      Public
      A repository for managing tasks relating to the production of gene families for use by the Legume Federation
      Shell
      •0•0•7•0•Updated Jun 8, 2018Jun 8, 2018

    • Workshops

      Public
      A repository for resources and task management relating to workshops hosted for the project
      0•1•3•0•Updated Apr 3, 2018Apr 3, 2018

    • legumefederation.org

      Public
      issues pertaining to the project website
      0•0•3•0•Updated Mar 8, 2018Mar 8, 2018

    • coge-api

      Public
      A high-level Java API for retrieving, adding, updating and deleting CoGe data via its REST API. Uses Resty.
      Java
      •2•0•0•0•Updated Dec 27, 2017Dec 27, 2017

    • Interface-and-Usability

      Public
      Repo for tracking issues on LegFed interface and usability
      0•0•11•0•Updated Dec 3, 2017Dec 3, 2017

    • Meetings

      Public
      Planning for meeting talks and posters
      0•0•1•0•Updated Nov 10, 2017Nov 10, 2017

    • gruence

      Public
      consistency and other filter properties in gene families
      0•0•0•0•Updated Nov 1, 2017Nov 1, 2017

    • Outreach

      Public
      Tracking activities related to interfacing with other groups (primarily users and non-funded federation members)
      0•0•4•0•Updated Oct 25, 2017Oct 25, 2017

    • Federation

      Public
      Code and issues around federation
      0•0•0•0•Updated Oct 10, 2017Oct 10, 2017

    • Traits

      Public
      Handling of traits within Legume Federation software components, and recommendations to data curators.
      0•0•0•0•Updated Oct 8, 2017Oct 8, 2017

    • integrate-medtr-hapmap

      Public
      Repository for managing tasks related to integrating the Medicago HapMap data into LegFed
      0•0•7•0•Updated Oct 3, 2017Oct 3, 2017

    • Seq2Tree

      Public
      A Tripal module for placing sequence on a phylogenetic tree.
      PHP
      •0•0•0•0•Updated Sep 22, 2017Sep 22, 2017

    • supervisor

      Public
      Supervisor process control system for UNIX
      Python
      •
      Other
      •1.3k•0•0•0•Updated Jun 22, 2017Jun 22, 2017

    • legfed_theme

      Public
      drupal theme for legfed website
      CSS
      •0•0•0•0•Updated Jun 22, 2017Jun 22, 2017

    • tripal

      Public
      The Tripal "core" package, a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.…
      PLpgSQL
      •
      GNU General Public License v2.0
      •53•0•2•0•Updated Feb 13, 2017Feb 13, 2017

    • ontology_search

      Public
      Tripal extension module that carries out hierarchical ontology searches
      PHP
      •1•0•0•0•Updated Oct 7, 2016Oct 7, 2016

    • meta_iron

      Public
      a tool that flattens and regularizes metadata
      Python
      •
      Other
      •0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • datastore-public

      Public
      A web-based file browser for iRODS with metadata-based templating.
      CSS
      •7•0•0•0•Updated Jun 1, 2016Jun 1, 2016

    • TraitLoader

      Public
      Perl loading scripts for QTL, map and marker data designed for Tripal/chado
      Perl
      •0•0•0•0•Updated Dec 16, 2015Dec 16, 2015
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