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    21 repositories

    • PepSeqPred

      Public
      A machine learning model designed to predict peptides that are likely to contain epitopes.
      Python
      •0•1•0•0•Updated Dec 31, 2025Dec 31, 2025

    • PepSIRF

      Public
      PepSIRF: Peptide-based Serological Immune Response Framework
      C++
      •
      GNU General Public License v3.0
      •2•12•5•2•Updated Oct 26, 2025Oct 26, 2025

    • Library-Design

      Public
      Repository for code associated with peptide library design
      Python
      •
      GNU General Public License v3.0
      •3•8•1•1•Updated May 15, 2025May 15, 2025

    • q2-PSEA

      Public
      Python
      •1•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • q2-ps-plot

      Public
      Qiime2 Plug-in for the creation of visualizations from PepSIRF outputs.
      Python
      •
      GNU General Public License v3.0
      •2•0•2•0•Updated Apr 24, 2025Apr 24, 2025

    • q2-autopepsirf

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•2•2•Updated Feb 5, 2025Feb 5, 2025

    • q2-ps-qc

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•2•2•Updated Feb 4, 2025Feb 4, 2025

    • pepsirf-q2-plugin-docs

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated May 16, 2024May 16, 2024

    • q2-pepsirf

      Public
      Python
      •
      GNU General Public License v3.0
      •3•0•0•2•Updated Apr 25, 2024Apr 25, 2024

    • Miscellaneous

      Public
      A set of miscellaneous scripts used to perform a set of miscellaneous analyses
      Python
      •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.7k•0•0•0•Updated Apr 6, 2023Apr 6, 2023

    • C-KmerOligo

      Public
      C
      •1•1•0•0•Updated Jun 1, 2021Jun 1, 2021

    • SplitBlastSlurm

      Public
      Scripts to multiplex BLAST jobs on a server managed by slurm
      Python
      •2•1•0•0•Updated Dec 10, 2019Dec 10, 2019

    • q2-pepsirf_discontinued

      Public archive
      QIIME2 plugin for the pep_sirf package
      Python
      •0•0•0•0•Updated Aug 21, 2019Aug 21, 2019

    • ProteinOligoLibrary

      Public
      Python
      •0•0•0•0•Updated Jan 18, 2019Jan 18, 2019

    • Taxonomic-Clustering

      Public
      Python
      •0•0•0•0•Updated Nov 7, 2018Nov 7, 2018

    • Protein-Oligo

      Public
      Python
      •0•0•0•0•Updated Sep 13, 2018Sep 13, 2018

    • netMHCpan-4.0-parse

      Public
      Parses xls files created by netMHCpan-4.0
      Python
      •1•6•1•0•Updated Aug 16, 2018Aug 16, 2018

    • py-slurmscript

      Public
      Python wrapper for the creation and execution of batch scripts on a slurm-based HPC cluster
      Python
      •0•0•0•0•Updated Aug 7, 2018Aug 7, 2018

    • Hierarchical-Clustering

      Public
      Python
      •0•0•0•0•Updated Jul 2, 2018Jul 2, 2018

    • Kmer-Protein-Oligo

      Public
      Python
      •0•0•0•0•Updated May 4, 2018May 4, 2018