Repositories list

• scinet-site

  Public
  The SCINet website for USDA-ARS; ISU GIF contributions

  HTML

  •

  Other

  •2727 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2026May 2, 2026

• scinet-site-obsolete

  Public
  A prototype of the USDA-ARS Website

  HTML

  •

  Other

  •141141 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• bioinformatics-workbook

  Public
  Bioinformatics Workbook repository

  bioinformatics

  bioinformatics

  HTML

  •

  MIT License

  •9292 forks•208208 stars•55 issues•55 pull requests•Updated Apr 18, 2026Apr 18, 2026

• geospatialworkbook

  Public
  Tutorials for the informatics on geographical information

  Jupyter Notebook

  •99 forks•77 stars•00 issues•11 pull request•Updated Apr 15, 2026Apr 15, 2026

• genome_assembly_workshop

  Public
  This repository details the various datasets and techniques attempted by the Genome informatics facility toward the goal of conducting USDA genome assembly work…

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• 2025_PEdwards_Methylation

  Public
  Epigenetic analysis of red-backed vole hippocampal methylomes across population cycle phases using whole-genome enzymatic methyl sequencing (EM-seq).

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• common_scripts

  Public
  my bin directory

  Perl

  •4343 forks•4545 stars•22 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• datascience-workbook

  Public
  Introduction to large scale computing and data wrangling with hands-on tutorials

  pythonlinuxcli+ 13

  pythonlinuxclirjuliaproject-managementcloud-computingresearch-projectdata-wranglingdevelopment-environment+ 6

  HTML

  •

  MIT License

  •77 forks•1616 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• slurm-workshop-2026

  Public
  Shell

  •11 fork•22 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• scinet-workbooks-devel

  Public
  Jupyter Notebook

  •

  Other

  •66 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2026Jan 5, 2026

• isu-commandline-intro-2025

  Public
  An introduction to the command line.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 3, 2025Dec 3, 2025

• ChickenSFB-GenomeAssembly

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• F2025-BCB-5670-01

  Public
  Week of 10/27. LLM and RNA-Seq learning to prompt.

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 30, 2025Oct 30, 2025

• isu-nextflow-workshop

  Public
  Developing pipelines with Nextflow

  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 21, 2025Oct 21, 2025

• isu-bash-pipeline-2025

  Public
  Introduction to pipeline development in bash

  Shell

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• Repo_skeleton

  Public
  Default files to copy over to a new Repo

  88 forks•99 stars•00 issues•00 pull requests•Updated Sep 2, 2025Sep 2, 2025

• repoReleases

  Public
  Grab all Bioinformatic software release notes.

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2025Aug 26, 2025

• 2025-nextflow-workshop

  Public
  Nextflow

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 2, 2025Jun 2, 2025

• interactiveGraphing

  Public
  Using python, Plotly and dash to visualize informatics data.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 19, 2024Nov 19, 2024

• 2024_Toth_Bimpatiens

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 17, 2024Oct 17, 2024

• 2024_Baum_SCN_Protease_Collaboration

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 8, 2024Aug 8, 2024

• B_dahlbomii_Genome_And_Annotation

  Public
  00 forks•22 stars•00 issues•00 pull requests•Updated Apr 4, 2024Apr 4, 2024

• data_graphing

  Public
  ready-made python-Plotly applications for data visualization

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 21, 2023Dec 21, 2023

• geo_utils

  Public
  The collection of small Python-based utilities for geospatial analysis

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2023Sep 12, 2023

• data_wrangling

  Public
  mini python applications for common tasks in data processing

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated May 3, 2023May 3, 2023

• 2022_Bean_mergeData

  Public
  Add matching labels from the reference 2-column file of label pairs.

  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Mar 22, 2023Mar 22, 2023

• 101workbook

  Public
  This is the index page for anyone that tries the main domain name and can't remember the subdomain names

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 12, 2023Jan 12, 2023

• ideogram_db

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 26, 2022Oct 26, 2022

• AI-workbook

  Public
  AI workbook to put tutorials

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 16, 2022Sep 16, 2022

• SequelQC

  Public
  PacBio quality check program specifically for Sequel platform

  R

  •

  GNU General Public License v3.0

  •22 forks•88 stars•22 issues•00 pull requests•Updated Sep 2, 2022Sep 2, 2022