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@FernandoLab Samodha Fernando

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    24 repositories

    • Bovine-oral-microbiome

      Public
      This repository contains codes, supplementary material and other datasets for our manuscript that investigates the early development of the bovine oral and rume…
      R
      •
      GNU General Public License v2.0
      •2•0•0•0•Updated May 9, 2025May 9, 2025

    • Forensic-applications-of-viral-DNA-transferred-by-touch-from-human-skin-surfaces

      Public
      This repository holds the code and some processed datasets for the project "Forensic applications of viral DNA transferred by touch from human skin surfaces"
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • microbiota-profiling-HIV-drug-injectors-PR-frontiers-in-micro

      Public
      Microbiota profiling of subjects who were HIV-1(+)/HIV-1(-) and were also drug-injectors or non-injectors from a study population in PR
      2•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • empirical_16S_filtration

      Public
      Empirical prevalence and abundance filtration derived from mock microbial communities applied to rumen microbiome data
      R
      •1•0•0•0•Updated Mar 8, 2024Mar 8, 2024

    • MinION_high_consequence_viral_pathogens

      Public
      0•1•0•0•Updated Nov 20, 2023Nov 20, 2023

    • Graham_2022_Virome_AMG_AMR

      Public
      Shell
      •
      MIT License
      •3•0•0•0•Updated May 12, 2022May 12, 2022

    • 16S_workshop_2021

      Public
      Fernando Lab 2021
      2•0•0•1•Updated May 27, 2021May 27, 2021

    • mock_pipeline_fernando_lab_2021

      Public
      2021 Fernando Lab Workshop
      0•0•0•0•Updated May 22, 2021May 22, 2021

    • liver-abcess-microbiome

      Public
      R
      •2•0•0•0•Updated Mar 22, 2021Mar 22, 2021

    • IBK-Year1-

      Public
      1•0•0•0•Updated Jan 6, 2021Jan 6, 2021

    • men_mice_and_pigs

      Public
      Data analysis for study comparing the establishment of human fecal bacterial communities in HMA murine and porcine models
      Shell
      •2•2•0•0•Updated Jan 5, 2021Jan 5, 2021

    • Liver_Abscess_Microbiome_Transcriptome

      Public
      1•0•0•0•Updated Sep 4, 2020Sep 4, 2020

    • inStrain

      Public
      Bioinformatics program inStrain
      Python
      •
      GNU General Public License v3.0
      •37•0•0•0•Updated Mar 24, 2020Mar 24, 2020

    • GWAS_Beef_Study

      Public
      1•0•0•0•Updated Sep 18, 2019Sep 18, 2019

    • genomics-r-intro

      Public
      Python
      •
      Other
      •92•0•0•0•Updated Jul 2, 2019Jul 2, 2019

    • MetaOmics_Workshop

      Public
      Shell
      •
      MIT License
      •1•0•0•0•Updated May 14, 2019May 14, 2019

    • pipeCoverage

      Public
      Quickly calculate coverage of sequences in a .sam file while retaining breadth information
      Python
      •3•0•0•0•Updated Mar 20, 2019Mar 20, 2019

    • 2017_RumenMicrobiome_Beef

      Public
      Python
      •3•0•0•0•Updated Jan 11, 2018Jan 11, 2018

    • MAGpy

      Public
      Snakemake pipeline for annotating metagenome-assembled genomes (MAGs) (pronounced mag-pie)
      Perl
      •
      GNU General Public License v3.0
      •30•0•0•0•Updated Dec 21, 2017Dec 21, 2017

    • 2016_Anderson_et_al_JAM_Acclimation

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Feb 1, 2017Feb 1, 2017

    • rumen_virome

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 9, 2017Jan 9, 2017

    • 2016_Paz_et_al_Dairy_Breeds

      Public
      HTML
      •2•0•0•0•Updated Mar 10, 2016Mar 10, 2016

    • Test

      Public
      0•0•0•0•Updated Feb 15, 2016Feb 15, 2016

    • 2016_Xie_et_al

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 7, 2015Dec 7, 2015
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