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@EmbryoPhenomics EmbryoPhenomics

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    15 repositories

    • embryophenomics

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Feb 7, 2026Feb 7, 2026

    • fast_img_compile

      Public
      Parallel processing script for concatenating image sequences into AVI videos, specifically for MicroManager acquisitions.
      Python
      •0•1•0•0•Updated Dec 16, 2025Dec 16, 2025

    • JHAM-CAM-V1

      Public
      Python
      •0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • dev-resnet

      Public
      3D ConvNet for automating the detection of developmental events. Weights, training and inference scripts are included.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 16, 2025May 16, 2025

    • phenomyx

      Public
      Phenomyx
      HTML
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • LabEmbryoCam

      Public
      Hardware and software for building and running a LabEmbryoCam system for phenotyping aquatic embryos
      Python
      •
      MIT License
      •0•2•0•0•Updated Jan 29, 2025Jan 29, 2025

    • heartcv

      Public
      Software for automated quantification of cardiac traits from video of transparent animals.
      Python
      •
      MIT License
      •0•2•0•0•Updated Apr 4, 2024Apr 4, 2024

    • embryo_segmentation

      Public
      Models, weights and scripts for semantic segmentation of embryos in microscopy images. Including popular CNNs such as UNet, PSPnet and DeepLabV3.
      Python
      •
      MIT License
      •0•3•0•0•Updated Aug 8, 2023Aug 8, 2023

    • egg_detection

      Public
      Egg detection in microscopy images using 2D ConvNets. Weights currently available for Lymnaea stagnalis.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 21, 2023Jul 21, 2023

    • embryocv_data_view

      Public
      A little interactive app for visualising individual level phenome data from EmbryoCV.
      Python
      •
      MIT License
      •0•2•0•0•Updated Dec 5, 2022Dec 5, 2022

    • fieldep_hardware

      Public
      CAD files and build guides for FieldEP hardware.
      Io
      •0•0•0•0•Updated Sep 28, 2022Sep 28, 2022

    • vuba

      Public
      An easy to use library for constructing OpenCV HighGUI interfaces.
      pythonopencvcomputer-vision
      pythonopencvcomputer-visionimage-processing
      Python
      •
      MIT License
      •0•3•0•0•Updated Mar 4, 2022Mar 4, 2022

    • embryocv_ept_examples

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated May 29, 2021May 29, 2021

    • eptR

      Public
      R code used in the analysis and visualisation of EPT datasets.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2021Mar 9, 2021

    • vimbaPy

      Public
      Helper/convenience functions for interfacing with pymba and VimbaPython.
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 18, 2020Apr 18, 2020
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