Repositories list

• run_esmapfold

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• run_simplefold

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• opsintools

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• T7_nblA

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 8, 2026Mar 8, 2026

• SzRs

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• run_deep_tmhmm

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• opsintools-build

  Public
  Python

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  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 24, 2025Dec 24, 2025

• cyanoXRs

  Public
  Python

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  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 13, 2025Nov 13, 2025

• RhodopsinProfiles

  Public
  Rhodopsin domain extraction workflow

  Python

  •11 fork•22 stars•11 issue•11 pull request•Updated Nov 6, 2025Nov 6, 2025

• Kariarchaeaceae

  Public
  Structural insights into light harvesting by antenna-containing rhodopsins in marine Asgard archaea. Bioinformatic Workflow

  Python

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 16, 2025May 16, 2025

• HulaCCR1

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• ACRs

  Public
  HTML

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  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 4, 2024Oct 4, 2024

• TAT

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 13, 2024Sep 13, 2024

• BLASSO-Rhodopsin

  Public
  Wrapper for BLASSO-for-Rhodopsins

  Python

  •

  Creative Commons Attribution 4.0 International

  •11 fork•11 star•00 issues•00 pull requests•Updated Aug 22, 2024Aug 22, 2024

• cymbomonas-genome

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2023Oct 1, 2023

• cymbomonas-viruses

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2023Oct 1, 2023

• phaeocystis-viral-elements

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 3, 2023Jan 3, 2023

• Gezelvirus

  Public
  Phaeocystis viruses

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 3, 2023Jan 3, 2023

• antenna

  Public
  R

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  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2022Dec 4, 2022

• ViralHeRs

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2022Aug 18, 2022

• pelagisphaera

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 10, 2022Aug 10, 2022

• fosmids

  Public
  Fosmid assembly annotation

  Perl

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 24, 2022Jul 24, 2022

• RRB

  Public
  JavaScript

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  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2022Apr 3, 2022

• Hula-Heliorhodopsins

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2021Nov 14, 2021

• RhodopsinsReview

  Public
  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 11, 2021Aug 11, 2021

• PoV-01B

  Public
  Pyramimonas orientalis genome assembly pipeline

  Perl

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 24, 2021May 24, 2021

• FosmidPlacer

  Public
  Phylogenetic placement for environmental DNA fragments

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2021Feb 10, 2021

• nblA

  Public
  Shell

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  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 30, 2020Jul 30, 2020

• MerMAIDs

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2019Mar 13, 2019

• helio_tax

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 23, 2018Nov 23, 2018