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flu: add trees to internal segments, add old sequences to ha/na builds, add h2n2, h1n1, and all-b builds #398

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rneher merged 25 commits into from
Jan 13, 2026
Merged

flu: add trees to internal segments, add old sequences to ha/na builds, add h2n2, h1n1, and all-b builds #398

rneher merged 25 commits into from
Jan 13, 2026

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@rneher rneher commented Dec 20, 2025

Description of proposed changes

This PR adds trees to internal segments along with example sequences.

Checklist

  • adjust changelogs and readme

@rneher rneher temporarily deployed to refs/pull/398/merge December 20, 2025 18:32 — with GitHub Actions Inactive
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rneher commented Dec 20, 2025

Trial link: https://master.clades.nextstrain.org/?dataset-server=gh:@flu-2025-12

@rneher rneher temporarily deployed to refs/pull/398/merge December 20, 2025 19:06 — with GitHub Actions Inactive
@rneher rneher temporarily deployed to refs/pull/398/merge January 7, 2026 18:23 — with GitHub Actions Inactive
@rneher rneher temporarily deployed to refs/pull/398/merge January 9, 2026 14:47 — with GitHub Actions Inactive
@rneher rneher temporarily deployed to refs/pull/398/merge January 9, 2026 17:26 — with GitHub Actions Inactive
@rneher rneher temporarily deployed to refs/pull/398/merge January 9, 2026 18:59 — with GitHub Actions Inactive
@rneher rneher temporarily deployed to refs/pull/398/merge January 10, 2026 13:19 — with GitHub Actions Inactive
@rneher rneher deployed to refs/pull/398/merge January 13, 2026 20:33 — with GitHub Actions Active
@rneher rneher changed the title WIP flu: add trees to internal segments, add old sequences to ha/na builds flu: add trees to internal segments, add old sequences to ha/na builds, add h2n2, h1n1, and all-b builds Jan 13, 2026
@rneher rneher merged commit 73aa0ee into master Jan 13, 2026
@rneher rneher deleted the flu-2025-12 branch January 13, 2026 21:11
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@rneher @nextstrain-bot