C++ search#210

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Commits on Mar 28, 2026

docs: add pruneReinsertTbrMoves to SearchControl.Rd (codoc fix)
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chore: E-003 codoc fix logged; agent-E.md updated
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chore: S-COORD-41 (codoc fix; T-289 Stage 4 running; PR status)
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chore: T-290 complete — Brazeau phase profiling + wagnerStarts analysis
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fix(T-291): update benchmark_run() to new ts_driven_search interface
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chore: T-291 complete; to-do.md updated
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chore: S-COORD-41 update — PR #210 CI status post-codoc-fix
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docs: update AGENTS.md with T-290b Brazeau phase profiling findings
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chore: E-005 S-RED ts_strategy.h + ts_temper complete (no bugs)
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chore: re-remove T-290 (completed G-001; clobbered by concurrent d07f338b)
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fix(T-289): disable pruneReinsert in large preset
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chore: T-289 complete; agent-E IDLE
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chore: S-COORD-42; T-269 complete (no benefit from fine-grained interleaving); F-027/F-028/F-029 logged
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chore: S-RED focus 28 complete — ts_mc_fitch, ts_tabu, ts_prune_reinsert.h (no bugs)
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perf(T-245): TBR 4-wide candidate batch + flat-variant switch
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chore: agent-F T-245 ASSIGNED; GHA 23690208221 dispatched
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feat(T-289b): pruneReinsertNni + pruneReinsertFullMoves to reduce large-tree PR cost
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fix: suppress covr false-positive from spell_check_test source-dir warning
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chore: S-COORD round 43 — spelling fix; T-245 parked; PR #210 re-triggered
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chore(T-289f): Stage 5 benchmark — PR NNI polish vs TBR polish vs baseline
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docs: update large preset PR comment to reflect T-289 Stage 4 disable decision
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chore: S-COORD round 44 — T-245 GHA PASS; S-RED focus 29 clean; PR pending
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chore: T-245 status → PR #238; update S-COORD/S-PR notes
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chore: agent-e PARKED — T-289f NNI polish done, awaiting GHA + Hamilton
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chore: agent-F IDLE after T-245 + spelling fix + S-RED focus 29
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Merge pull request #237 from ms609/feature/drift-constraint-fix
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Merge pull request #238 from ms609/feature/tbr-batch
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chore: agent-e T-289f Stage 5 dispatched (SLURM 16622224)
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chore: S-COORD round 45 — PRs #237+#238 merged; agent-G active; T-289f Stage 5 running
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chore: S-RED focus 30 clean (ts_drift + ts_fitch/tbr post-merge); agent-G state updated
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fix(T-289f): update Hamilton script to use cpp-search — feature/tbr-batch deleted after PR #238 merge
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chore: agent-G T-289f diagnosis + T-290c complete; resubmit pending
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docs: update AGENTS.md wagnerStarts section with T-290c empirical findings
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chore: S-RED focus 31 — ts_prune_reinsert.cpp; filed G-006 (nni_full ignores constraints P3)
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Commits on Mar 29, 2026

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Handle DNA in QuartetConcordance
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ConcordanceTable margins
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User issues
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Merge branch 'main' into cpp-search

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coord: T-303 → PR #247 (t303)
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