Updated pyproject structure.

Author: IanShi1996

README.md

@@ -8,13 +8,9 @@ Several configurations of the mRNABench are available.
 
 ### Datasets Only
 If you are interested in the benchmark datasets **only**, you can run:
-```bash
-conda create --name mrna_bench python=3.10
-conda activate mrna_bench
-git clone https://github.com/IanShi1996/mRNABench.git
-cd mRNABench
 
-pip install -e .
+```bash
+pip install mrna-bench
 ```
 
 ### Full Version
@@ -25,11 +21,9 @@ CUDA 12.1 and Triton uninstalled (due to a DNA-BERT2 issue).
 ```bash
 conda create --name mrna_bench python=3.10
 conda activate mrna_bench
-git clone https://github.com/IanShi1996/mRNABench.git
-cd mRNABench
 
 pip install torch==2.2.2 --index-url https://download.pytorch.org/whl/cu121
-pip install -e .[base_models] 
+pip install mrna-bench[base_models]
 pip uninstall triton
 ```
 Inference with other models will require the installation of the model's

mrna_bench/config.yaml

@@ -1 +1 @@
-data_path: /data1/morrisq/ian/rna_benchmarks
+data_path: /data1/morrisq/ian/benchmarks

pyproject.toml

@@ -1,13 +1,12 @@
 [project]
-name = "mrna_bench"
-version = "1.0.0"
+name = "mrna-bench"
+version = "1.0.1"
 description = "Benchmarking suite for mRNA property prediction."
 readme = "README.md"
 authors = [
     { name = "Ruian (Ian) Shi", email = "ian.shi@mail.utoronto.ca" }
 ]
 requires-python = ">= 3.10"
-dynamic = ["version"]
 license = { file = "LICENSE" }  # Include a LICENSE file in your repo
 keywords = ["mrna", "genomic foundation model", "benchmark"]
 classifiers = [
@@ -49,4 +48,4 @@ requires = [
 build-backend = "setuptools.build_meta"
 
 [tool.setuptools]
-py-modules = ["mrna_bench"]
+packages = ["mrna_bench"]