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@morrislab

Morris Lab

Machine learning and adaptive algorithms for computational molecular biology

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  1. phylowgs phylowgs Public

    Application for inferring subclonal composition and evolution from whole-genome sequencing data.

    Python 114 56

  2. TrackSig TrackSig Public

    A framework to infer mutational signatures in cancer over time

    R 57 17

  3. qapa qapa Public

    RNA-seq Quantification of Alternative Polyadenylation

    Python 51 10

  4. mRNABench mRNABench Public

    Collection of mRNA benchmarks

    Python 48 3

  5. pairtree pairtree Public

    Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples a…

    Python 43 10

  6. mlworkshop mlworkshop Public

    Machine learning workshop presented at GLBIO 2016

    Jupyter Notebook 11 2

Repositories

Showing 10 of 35 repositories
  • metient Public
    morrislab/metient’s past year of commit activity
    Jupyter Notebook 11 MIT 2 0 0 Updated Apr 2, 2026
  • mRNABench Public

    Collection of mRNA benchmarks

    morrislab/mRNABench’s past year of commit activity
    Python 48 AGPL-3.0 3 0 0 Updated Mar 25, 2026
  • qapa Public

    RNA-seq Quantification of Alternative Polyadenylation

    morrislab/qapa’s past year of commit activity
    Python 51 GPL-3.0 10 0 0 Updated Mar 21, 2026
  • jple Public

    Joint Protein-Ligand Embedding

    morrislab/jple’s past year of commit activity
    Python 3 BSD-3-Clause 1 1 0 Updated Oct 3, 2025
  • RNAcompete-deprecated Public archive

    Data analysis scripts for RNAcompete.

    morrislab/RNAcompete-deprecated’s past year of commit activity
    Perl 10 MIT 4 0 0 Updated Oct 1, 2025
  • rnacompete Public

    Reproducible pipeline to process and summarize RNAcompete data.

    morrislab/rnacompete’s past year of commit activity
    HTML 1 BSD-3-Clause 0 0 0 Updated Oct 1, 2025
  • RBPbinding Public archive

    Code for "A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function"

    morrislab/RBPbinding’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Oct 1, 2025
  • damuta Public

    Tandem signatures of DNA damage and misrepair in cancer

    morrislab/damuta’s past year of commit activity
    Python 5 0 1 0 Updated Sep 12, 2025
  • orchard Public
    morrislab/orchard’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Jan 28, 2025
  • pairtree Public

    Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

    morrislab/pairtree’s past year of commit activity
    Python 43 MIT 10 0 0 Updated Apr 18, 2024
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