kraken-vagrant

1. Install vagrant + virtualbox

   https://www.vagrantup.com/

2. Clone this repo somewhere

   git clone git@github.com:Vallendrez-Bio/kraken-vagrant.git
   

3. Put your data in the kraken-vagrant directory on your local computer. This directory will be accessible under /vagrant inside the virtual machine.

4. Start the Vagrant instance

   vagrant up
   

5. Connect to the vagrant instance

   vagrant ssh
   

6. Use your Linux command-line foo wizardry to run kraken on your data. Just make sure the output goes to /vagrant/... so it is accessible on your local computer.