This repository was archived by the owner on Jul 29, 2023. It is now read-only.
Inference figures overlays #155
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
jennyfolkesson
previously approved these changes
Jul 12, 2022
jennyfolkesson
suggested changes
Jul 12, 2022
Contributor
jennyfolkesson
left a comment
jennyfolkesson
left a comment
There was a problem hiding this comment.
I'm fine with the changes but could you please fix the test before merging?
Broken test: tests.plotting.plot_utils_tests.test_save_predicted_images
Contributor
Author
|
I will fix the tests once the issue of running tests is solved. |
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Hi,
this PR is about changing the saved figures in the inference step. It now includes:
Best,
Johanna
Example old figure:
Example new figure:
Command:
python /home/pwrai/microDL/microDL/micro_dl/cli/inference_script.py --config /gpfs/CompMicro/projects/virtualstaining/2022_microDL_nuc_mem/configfiles/tests/config_inference_test.yml --gpu 0