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Governance model integration and curator updates#247

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Bankso wants to merge 53 commits into
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study-duo-update
Open

Governance model integration and curator updates#247
Bankso wants to merge 53 commits into
mainfrom
study-duo-update

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@Bankso

@Bankso Bankso commented Apr 29, 2026

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Changelog

  • Added conditional attributes and valid values from governance collaboration on DUO
  • Updated make file and JSON schema generator script to use CSV. For the qc version of the model, we will still need to generate JSON-LD until we are no longer using schematic for validation.
  • Removed unused specimen information from File View template
  • Updated approach to assay-specific metadata: all file-level annotations will be incorporated into assay-specific schemas.
    • E.g., SequencingRNALevel1 will contain non-redundant attributes from FileView, SequencingLevel1, and SequencingRNALevel1. This ensures compatibility with the curator File View system
  • Updated Id and Key fields to use regex patterns that enforce alignment with CCKP docs

@Bankso Bankso added the major PR label for a major update label Apr 29, 2026
@Bankso Bankso marked this pull request as ready for review June 24, 2026 23:00
@Bankso Bankso requested a review from aditigopalan as a code owner June 24, 2026 23:00
@Bankso Bankso requested a review from aditya-nath-sage June 24, 2026 23:05

@aditya-nath-sage aditya-nath-sage left a comment

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LGTM!

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2 participants