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1. scVI.jl scVI.jl Public

   A Julia package for fitting VAEs to single-cell data using count distributions.

   Julia 25 6

2. LatentDynamics.jl LatentDynamics.jl Public

   A Julia package for learning dynamics based on ODEs in the latent space of a VAE

   Julia 3 1

3. DeepDynamicModelingWithJust2TimePoints DeepDynamicModelingWithJust2TimePoints Public

   Combining deep learning and dynamic modeling to fit individual trajectories based on very few time points

   Julia 2

4. DifferentiableProgrammingForStatisticalModeling DifferentiableProgrammingForStatisticalModeling Public

   Illustrating how statistical modeling can benefit from differentiable programming in challenging modeling tasks.

   Julia 3

5. NORBIS_workshop_differentiable_programming NORBIS_workshop_differentiable_programming Public

   Code notebooks and further materials for the workshop on "Differentiable programming for flexible modelling with small data" at the 8th NORBIS conference, 24-28 October 2022, Rosendal (Norway).

   Jupyter Notebook 2 2

6. OffTargetPredictionBenchmark OffTargetPredictionBenchmark Public

   Code and documentation to reproduce benchmark results of CRISPR-Cas9 off-target prediction tools

   Python