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Pull requests: loculus-project/loculus

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Pull requests list

chore(deps-dev): bump the minorandpatch group in /integration-tests with 4 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5835 opened Jan 14, 2026 by dependabot bot Loading…
chore(deps): bump astro from 5.16.8 to 5.16.9 in /docs in the minorandpatch group dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5834 opened Jan 14, 2026 by dependabot bot Loading…
wip preview Triggers a deployment to argocd
#5831 opened Jan 12, 2026 by theosanderson • Draft
3 tasks
refactor(integration-tests): remove unused methods
#5830 opened Jan 11, 2026 by chaoran-chen Loading…
4
chore(kubernetes): update to SILO 0.9 and LAPIS 0.6 preview Triggers a deployment to argocd
#5814 opened Jan 8, 2026 by fengelniederhammer • Draft
3 tasks done
2
@fengelniederhammer
chore(deps): bump the minor group across 1 directory with 4 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#5812 opened Jan 7, 2026 by dependabot bot Loading…
chore(deps-dev): bump the minor group across 1 directory with 6 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5811 opened Jan 7, 2026 by dependabot bot Loading…
chore(deps): bump dtolnay/rust-toolchain from 1.92 to 1.100 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5808 opened Jan 7, 2026 by dependabot bot Loading…
Helm output update_helm_output
#5807 opened Jan 7, 2026 by theosanderson • Draft
3 tasks
1
feat!(config, website): flip config and website to segment-reference structure preview Triggers a deployment to argocd
#5799 opened Jan 5, 2026 by anna-parker • Draft
4 tasks
1
7
test(website): Add vitest unit tests for sequence details modal
#5789 opened Jan 3, 2026 by Copilot AI • Draft
3 tasks done
2
@corneliusroemer
chore: add GitHub Copilot instructions
#5787 opened Jan 3, 2026 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
feat(integration-tests): optimize integration tests by using bulk submission
#5785 opened Jan 3, 2026 by Copilot AI • Draft
2 of 3 tasks
1
@corneliusroemer
Make silo replicas configurable and add PDBs for HA
#5774 opened Dec 26, 2025 by google-labs-jules bot • Draft
1
fix(deployment): Use SHA256 digests and mirror all external images to GHCR update_db_schema
#5772 opened Dec 19, 2025 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
15
feat(deposition): use zstd download and orjsonl for released entries
#5768 opened Dec 19, 2025 by google-labs-jules bot • Draft
7
feat(backend, deposition): add a deposition status to the backend and use to filter get-released-data prior to streaming update_db_schema
#5767 opened Dec 19, 2025 by anna-parker Loading…
3 tasks done
1
feat(silo-import): use orjsonl to parse ndjson, only check pipeline version of first record
#5764 opened Dec 19, 2025 by anna-parker Loading…
3 tasks done
1
9
feat(website): add diff view for comparing sequence versions preview Triggers a deployment to argocd
#5760 opened Dec 18, 2025 by corneliusroemer • Draft
5 of 8 tasks
1
chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5747 opened Dec 17, 2025 by dependabot bot Loading…
1
chore(deps): bump the minorandpatch group in /ingest with 8 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#5740 opened Dec 17, 2025 by dependabot bot Loading…
Feature/spring boot 4 experimental
#5736 opened Dec 17, 2025 by corneliusroemer • Draft
3 tasks
2
3
demo: mock ena, deposition api, deposition UI preview Triggers a deployment to argocd
#5728 opened Dec 16, 2025 by theosanderson • Draft
3
chore(deps): bump zod from 3.25.76 to 4.2.0 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5721 opened Dec 15, 2025 by dependabot bot Loading…
feat(kubernetes): correctly type submission and release dates
#5710 opened Dec 15, 2025 by chaoran-chen • Draft
3 tasks
1
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