kreshuklab · zh320 · Jun 5, 2026 · Jun 5, 2026 · Jun 5, 2026 · Jun 5, 2026
diff --git a/.gitattributes b/.gitattributes
@@ -1,5 +0,0 @@
-.n5 filter=lfs diff=lfs merge=lfs -text
-.tif filter=lfs diff=lfs merge=lfs -text
-.n5/** filter=lfs diff=lfs merge=lfs -text
-examples/data filter=lfs diff=lfs merge=lfs -text
-examples/data/** filter=lfs diff=lfs merge=lfs -text

diff --git a/.gitignore b/.gitignore
@@ -177,14 +177,17 @@ cython_debug/
 examples/data/test/
 examples/data/deformed_data/
 examples/data/test_data/
-data
+/data
 
 # huge data
 *.tif
 *.n5/
 *.png
 *.ome.zarr/
 
+# allow example tif files
+!examples/data/platy1_muscles_stardist_fixed.tif
+
 .DS_Store
 
 # Snakemake logs

diff --git a/examples/data/platy1_muscles_stardist_fixed.tif b/examples/data/platy1_muscles_stardist_fixed.tif
diff --git a/examples/data/rotation_matrix.txt b/examples/data/rotation_matrix.txt
diff --git a/examples/data/transformation_matrix.txt b/examples/data/transformation_matrix.txt