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1. Genentech/Perturb-OT Genentech/Perturb-OT Public

   Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.

   Jupyter Notebook 19 4

2. literature_reviewer_agent literature_reviewer_agent Public

   Concierge agent that does the heavy lifting for your literature review

   Python

3. pinellolab/crispr-bean pinellolab/crispr-bean Public

   Base Editing screens' Activity-Normalized variant effect size estimation

   Python 11 4

4. pinellolab/simba pinellolab/simba Public

   SIMBA: SIngle-cell eMBedding Along with features

   Python 66 8

5. pinellolab/simba_pbg pinellolab/simba_pbg Public

   A customized PyTorch-BigGraph (PBG) package for "simba", modified from https://github.com/facebookresearch/PyTorch-BigGraph

   Python 2