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JugLab

GitHub for the JugLab

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  1. n2v n2v Public

    This is the implementation of Noise2Void training.

    Python 470 119

  2. EmbedSeg EmbedSeg Public

    Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

    Python 126 23

  3. FourierImageTransformer FourierImageTransformer Public

    Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.

    Python 101 15

  4. pn2v pn2v Public

    This is our implementation of Probabilistic Noise2Void

    Python 77 12

  5. DenoiSeg DenoiSeg Public

    Joint training of denoising and segmentation.

    Jupyter Notebook 76 21

  6. PPN2V PPN2V Public

    Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"

    Python 57 10

Repositories

Showing 10 of 95 repositories
  • CellPaintMONO Public

    tools for analysis and comparison of cell painting data

    juglab/CellPaintMONO’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Dec 24, 2025
  • eps-Seg Public

    A hierarchical variational autoencoder based method for semantic segmentation of Electron Microscopy data.

    juglab/eps-Seg’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Dec 22, 2025
  • MicroSSIM Public

    Range Invariant SSIM

    juglab/MicroSSIM’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 0 1 1 Updated Dec 22, 2025
  • MicroSplit Public Forked from ashesh-0/Disentangle

    Experiments for MicroSplit were done using this code.

    juglab/MicroSplit’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Dec 19, 2025
  • scSplit Public Forked from ashesh-0/scSplit

    scSplit: Bringing Severity Cognizance to Image Decomposition in Fluorescence Microscopy

    juglab/scSplit’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 485 0 0 Updated Dec 4, 2025
  • denoiSplit Public
    juglab/denoiSplit’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 1 0 0 Updated Nov 27, 2025
  • featureforest Public

    A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier

    juglab/featureforest’s past year of commit activity
    Python 21 BSD-3-Clause 2 3 0 Updated Nov 24, 2025
  • HDN Public

    This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets

    juglab/HDN’s past year of commit activity
    Python 35 8 4 1 Updated Nov 7, 2025
  • MycroVerse Public

    Cell Simulator to map parametrical distributions into various modalities

    juglab/MycroVerse’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 0 1 Updated Oct 13, 2025
  • Tiling-Artefact-Quantification Public

    Tools to quantify and compare tiling artifacts in model predictions. Our framework measures and visualizes these differences, making it easier to compare artifact severity across different models or inference strategies.

    juglab/Tiling-Artefact-Quantification’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 20, 2025
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