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Update maximum-likelihood tree models in Quickstart #25

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Update maximum-likelihood tree models in Quickstart #25

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8 changes: 6 additions & 2 deletions doc/Quickstart.md
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Expand Up @@ -122,9 +122,13 @@ A few typically analyses are listed in the following. Note that it is assumed th

iqtree -s example.phy

* Infer maximum-likelihood tree using `GTR+I+G` model:
* Infer maximum-likelihood tree using `GTR+I+R` model for DNA alignment:

iqtree -s example.phy -m GTR+I+G
iqtree -s example.phy -m GTR+I+R

* Infer maximum-likelihood tree using `QC.PFAM+F+I+R` model for protein alignment:

iqtree -s prot.phy -m QC.PFAM+F+I+R
Comment on lines +129 to +131

* Perform ModelFinder without subsequent tree inference:

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