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Fix base modification filter canonical base lookup#1835

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kojix2 wants to merge 1 commit into
igvteam:mainfrom
kojix2:fix-basemod-canonical-base-filter
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Fix base modification filter canonical base lookup#1835
kojix2 wants to merge 1 commit into
igvteam:mainfrom
kojix2:fix-basemod-canonical-base-filter

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@kojix2 kojix2 commented May 18, 2026

Fix the canonical base passed to the base modification filter

Currently, canonicalBase is passed to the filter before it is updated from bmSet. As a result, the filter may receive the initial value instead of the actual canonical base.

This change passes bmSet.getCanonicalBase() directly when applying the filter.

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