Enhance VCFX with bug fixes, CI, Docker support & utilities#4
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jorgeMFS
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May 25, 2025
jorgeMFS
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- Key bug fixes (NaN output, build detection, sorting, newline endings)
- Optimized memory usage and optional debug output
- Reusable core utilities and gzip support
- GitHub Actions CI for build/tests and CTest integration
- Docker enhancements (entrypoint, image variable, resilient tests)
- vcfx CLI wrapper and streamlined CMake tooling
Fix sed usage in custom annotator test
…d-configuration Fix WebAssembly build setup
…x_tools_to_path.sh Fix path script for modern find
Fix newline issues in ignore files
…ing-logic Improve alignment checker memory usage
…-output Make haplotype extractor debug optional
…s.txt-and-dockerfile Add missing newline at EOF
…or-drop-library Add reusable utilities to vcfx_core
…s-files-line-by-line Refactor VCFX_merger to stream variants
…date-yaml-in-workflows Fix YAML workflow files
…project Add CI workflow for building and testing
…ompressed-streams Add gzip input support
Switch docs/tests to public container
…ble-in-test_docker.sh Make Docker tests optional
Fix Docker build dependencies
Add Python wrappers and wheel CI
Extend Python bindings
…commands Add docs command to vcfx wrapper
Fix YAML syntax
…on - Removed generated site/ directory (build artifact) - Fixed broken link in docs/docker.md - Fixed navigation structure in mkdocs.yml (moved VCFX_haplotype_extractor to proper Data Processing section) - Documentation builds successfully with mkdocs
Enable non-root installs
…n-parsing Fix Python setup version parsing
…_vcfx Fix Python bindings fallback
…vcfx-command Fix workflow PATH handling
…flow-for-python-setup Use setup-python in build workflow
…ctions-for-virtual-environment Update docs to recommend virtual env
…setter Fix heredoc delimiter in build workflow
…uild-test.yml Fix YAML build-test workflow
jorgeMFS
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Dec 9, 2025
Fix newline issues in ignore files
jorgeMFS
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Dec 9, 2025
Enhance VCFX with bug fixes, CI, Docker support & utilities
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