feat(agent): unify runtime cwd and provisioning#63
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Avoid a literal console.* call in the server-side cwd spike test so the grep-based invariant checker passes while preserving the node cwd assertion.
Avoid expensive workspace provisioning in server composition tests unless provisioning itself is under test, and prune .boring-agent/.git/node_modules from the shared file-search route.
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Splits the runtime cwd/provisioning work out of the plugin-agent PR.\n\nIncludes:\n- unified .boring-agent runtime layout\n- runtime cwd plumbing across direct/local/vercel-sandbox\n- runtime-aware provisioning for node packages, bins, and Python SDKs\n- macro SDK/provisioning support\n- runtime doctor diagnostics and matrix tests\n- file search pruning of runtime artifacts